Evidence map›Paper›PMID 31235787›Full record

ArticleNature communications2019

Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure.

Pablo Cordero, Victoria N Parikh, Elizabeth T Chin, Ayca Erbilgin, Michael J Gloudemans, Ching Shang, Yong Huang, Alex C Chang, Kevin S Smith, Frederick Dewey and 25 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Deciphering epistatic genetic regulation of cardiac hypertrophy.medRxiv : the preprint server for health sciences · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors at 11 institutions in 1 country.

Pablo CorderoDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Victoria N ParikhDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Elizabeth T ChinDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-5774-4236
Ayca ErbilginDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Michael J GloudemansBiomedical Informatics Program, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-9924-9943
Ching ShangDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Yong HuangDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Alex C ChangDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-9441-4033
Kevin S SmithDepartment of Pathology, Stanford University, Stanford, CA, 94305, USA.
Frederick DeweyDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Kathia ZaletaDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Michael MorleyDivision of Cardiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jeff BrandimartoDepartment of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Nicole GlazerDepartment of Medicine, Boston University School of Medicine, Boston, MA, 02118, USA.
Daryl WaggottDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Aleksandra PavlovicDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Mingming ZhaoDepartment of Pediatrics, Stanford University, Stanford, CA, 94305, USA.
Christine S MoravecDepartment of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland, OH, 44195, USA.
W H Wilson TangDepartment of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland, OH, 44195, USA.
Jamie SkreenProvidence Medical Group-Milwaukie, Portland, OR, 97222, USA.
Christine MalloyCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, 20740, USA.
Sridhar HannenhalliCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, 20740, USA.
Hongzhe LiBiostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Scott RitterDivision of Cardiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Mingyao LiBiostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Daniel BernsteinDepartment of Pediatrics, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-7761-5853
Andrew ConnollyDepartment of Pathology, University of California San Francisco, San Francisco, CA, 94143, USA.
Hakon HakonarsonDepartment of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Aldons J LusisDepartments of Medicine, University of California Los Angeles, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-9013-0228
Kenneth B MarguliesDivision of Cardiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Anna A Depaoli-RoachSchool of Medicine, Indiana University, Indianapolis, IN, 46202, USA.
Stephen B MontgomeryDepartment of Pathology, Stanford University, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-5200-3903
Matthew T WheelerDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA.
Thomas CappolaDivision of Cardiology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Euan A AshleyDivision of Cardiovascular Medicine, Stanford University, Stanford, CA, 94305, USA. euan@stanford.edu.ORCID http://orcid.org/0000-0001-9418-9577
Stanford University · USUniversity of Pennsylvania · USCleveland Clinic Lerner College of Medicine · USUniversity of Maryland, College Park · USBoston University · USChildren's Hospital of Philadelphia · USIndiana University – Purdue University Indianapolis · USProvidence Milwaukie Hospital · USStanford Medicine · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · US

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Integrative genomics of human heart failureR01HL105993 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI ASHLEY, EUAN A, CAPPOLA, THOMAS P. · 2011 to 2014
$8.9M
Genomics of myocardial transcription factors in cardiac remodelingR01HL088577 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CAPPOLA, THOMAS P. · 2007 to 2013
$5.3M
Physiologic effects of natriuretic peptide genetic variationR01HL098283 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI NEWTON-CHEH, CHRISTOPHER HOLMES, WANG, THOMAS J. · 2010 to 2013
$2.9M
Physiologic Profiling of sGC Genetic VariantsR01HL113933 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI NEWTON-CHEH, CHRISTOPHER HOLMES · 2013 to 2016
$2.3M
An Essential Role for miR-29b in the Protective Effect of Apelin in Diabetic Vascular StiffnessF32HL134233 · NHLBI · STANFORD UNIVERSITY · PI PARIKH, VICTORIA · 2016 to 2018
$107k
NHLBI NIH HHS F32 HL134233NHLBI NIH HHS R01 HL088577NHLBI NIH HHS R01 HL098283NHLBI NIH HHS R01 HL105993NHLBI NIH HHS R01 HL113933NLM NIH HHS T15 LM007033U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL134233
6 · The paper itself

Abstract

Heart failure is a leading cause of mortality, yet our understanding of the genetic interactions underlying this disease remains incomplete. Here, we harvest 1352 healthy and failing human hearts directly from transplant center operating rooms, and obtain genome-wide genotyping and gene expression measurements for a subset of 313. We build failing and non-failing cardiac regulatory gene networks, revealing important regulators and cardiac expression quantitative trait loci (eQTLs). PPP1R3A emerges as a regulator whose network connectivity changes significantly between health and disease. RNA sequencing after PPP1R3A knockdown validates network-based predictions, and highlights metabolic pathway regulation associated with increased cardiomyocyte size and perturbed respiratory metabolism. Mice lacking PPP1R3A are protected against pressure-overload heart failure. We present a global gene interaction map of the human heart failure transition, identify previously unreported cardiac eQTLs, and demonstrate the discovery potential of disease-specific networks through the description of PPP1R3A as a central regulator in heart failure.

Indexed as

AnimalsBenzeneacetamidesCells, CulturedDatasets as TopicDisease Models, AnimalFemaleGene Expression ProfilingGene Expression RegulationGene Knockdown TechniquesGene Regulatory NetworksGenome-Wide Association StudyHeart FailureHumansMaleMetabolic Networks and PathwaysMice2-(4-(2-methylpyridin-4-yl)phenyl)-N-(4-(pyridin-3-yl)phenyl)acetamideBenzeneacetamidesPhosphoprotein PhosphatasesPPP1R3A protein, humanPPP1R3A protein, mousePpp1r3a protein, ratPyridines

Identifiers

PMID31235787
PMCPMC6591478
OpenAlexW2949674711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.