Evidence map›Paper›PMID 31235774›Full record

ArticleJournal of human genetics2019

The extent of DNA methylation anticipation due to a genetic defect in ICR1 in Beckwith-Wiedemann syndrome.

Feifei Sun, Ken Higashimoto, Atsuko Awaji, Kenji Ohishi, Naoto Nishizaki, Yuka Tanoue, Saori Aoki, Hidetaka Watanabe, Hitomi Yatsuki, Hidenobu Soejima

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Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. DNA methylation analysis of multiple imprinted DMRs in Sotos syndrome reveals IGF2-DMR0 as a DNA methylation-dependent, P0 promoter-specific enhancer.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
4 · The record

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5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Feifei SunDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Ken HigashimotoDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan. higashim@cc.saga-u.ac.jp.
Atsuko AwajiDepartment of Pediatrics, Juntendo University Urayasu Hospital, Chiba, Japan.
Kenji OhishiDepartment of Pediatrics, Juntendo University Urayasu Hospital, Chiba, Japan.
Naoto NishizakiDepartment of Pediatrics, Juntendo University Urayasu Hospital, Chiba, Japan.ORCID http://orcid.org/0000-0001-9471-6146
Yuka TanoueDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Saori AokiDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Hidetaka WatanabeDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Hitomi YatsukiDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan.
Hidenobu SoejimaDivision of Molecular Genetics & Epigenetics, Department of Biomolecular Sciences, Faculty of Medicine, Saga University, Saga, Japan. soejimah@cc.saga-u.ac.jp.
Saga University · JPJuntendo University Urayasu Hospital · JP

Funding

Japan Agency for Medical Research and Development (AMED) 17ek0109205h0001Japan Agency for Medical Research and Development (AMED) 17ek0109234h0001Japan Agency for Medical Research and Development (AMED) 17ek0109280h0001MEXT | Japan Society for the Promotion of Science (JSPS) 16K09970MEXT | Japan Society for the Promotion of Science (JSPS) 17K08687National Center for Child Health and Development (NCCHD) 26-13
6 · The paper itself

Abstract

Beckwith-Wiedemann syndrome (BWS) is a representative imprinting disorder. Gain of methylation at imprinting control region 1 (ICR1-GOM), leading to the biallelic expression of IGF2 and silencing of H19, is one of the causative alterations in BWS. Twenty percent of BWS patients with ICR1-GOM have genetic defects in ICR1. Evidence of methylation anticipation in familial BWS patients with ICR1 genetic defects has been reported. However, the precise methylation pattern and extent of anticipation in these patients remain elusive. In addition, although age-related IGF2-DMR0 hypomethylation has been reported in the normal population, the period of its occurrence is unknown. In this study, we analyzed 10 sites (IGF2-DMR0, IGF2-DMR2, CTCF binding sites 1-7, and the H19 promoter) within the IGF2/H19 domain in familial BWS patients harboring a pathogenic variant in ICR1. We found that sites near the variant had relatively higher methylation in the first affected generation and observed methylation anticipation through maternal transmission in the next generation. The extent of anticipation was greater at sites far from the variant than nearby sites. The extended and severe GOM might be due to the insufficient erasure/demethylation of pre-acquired ICR1-GOM in primordial germ cells or during the preimplantation stage. In the normal population, age-related IGF2-DMR0 hypomethylation occurred; it became established by young adulthood and continued to old age. Further studies are needed to clarify (1) the precise mechanism of anticipation in patients with familial BWS and (2) the mechanism and biological significance of constitutive hypomethylation of IGF2-DMR0 and/or other imprinted differentially methylated regions.

Indexed as

Gene SilencingPedigreeResponse ElementsAdultBeckwith-Wiedemann SyndromeChildChild, PreschoolDNA MethylationFemaleHumansInfantInsulin-Like Growth Factor IIMaleMiddle AgedRNA, Long NoncodingH19 long non-coding RNAIGF2 protein, humanInsulin-Like Growth Factor IIRNA, Long Noncoding

Identifiers

PMID31235774
OpenAlexW2950210166

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.