Evidence map›Paper›PMID 31235587›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host.

Takuro Nakayama, Mami Nomura, Yoshihito Takano, Goro Tanifuji, Kogiku Shiba, Kazuo Inaba, Yuji Inagaki, Masakado Kawata

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. A genomic view of Earth's biomes.Nature reviews. Genetics · 2026
    Review
  2. The chitin raft hypothesis for the colonization of the open ocean by cyanobacteria.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  3. Article
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  5. Article
  6. Article
  7. Review
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  9. Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Tara Oceans: towards global ocean ecosystems biology.Nature reviews. Microbiology · 2020
    Review
  15. Article
  16. Genomics reveals alga-associated cyanobacteria hiding in plain sight.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Takuro NakayamaGraduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan; nakayama.t@tohoku.ac.jp.ORCID 0000-0001-5135-0156
Mami NomuraShimoda Marine Research Center, University of Tsukuba, Shimoda 415-0025, Japan.
Yoshihito TakanoFaculty of Science and Technology, Kochi University, Nankoku 783-8502, Japan.
Goro TanifujiDepartment of Zoology, National Museum of Nature and Science, Tsukuba 305-0005, Japan.
Kogiku ShibaShimoda Marine Research Center, University of Tsukuba, Shimoda 415-0025, Japan.
Kazuo InabaShimoda Marine Research Center, University of Tsukuba, Shimoda 415-0025, Japan.ORCID 0000-0001-8848-9733
Yuji InagakiCenter for Computational Sciences, University of Tsukuba, Tsukuba 305-8577, Japan.ORCID 0000-0003-0101-8483
Masakado KawataGraduate School of Life Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-8716-5438
University of Tsukuba · JPTohoku University · JPKōchi University · JPNational Museum of Nature and Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteria are one of the most important contributors to oceanic primary production and survive in a wide range of marine habitats. Much effort has been made to understand their ecological features, diversity, and evolution, based mainly on data from free-living cyanobacterial species. In addition, symbiosis has emerged as an important lifestyle of oceanic microbes and increasing knowledge of cyanobacteria in symbiotic relationships with unicellular eukaryotes suggests their significance in understanding the global oceanic ecosystem. However, detailed characteristics of these cyanobacteria remain poorly described. To gain better insight into marine cyanobacteria in symbiosis, we sequenced the genome of cyanobacteria collected from a cell of a pelagic dinoflagellate that is known to host cyanobacterial symbionts within a specialized chamber. Phylogenetic analyses using the genome sequence revealed that the cyanobacterium represents an underdescribed lineage within an extensively studied, ecologically important group of marine cyanobacteria. Metagenomic analyses demonstrated that this cyanobacterial lineage is globally distributed and strictly coexists with its host dinoflagellates, suggesting that the intimate symbiotic association allowed the cyanobacteria to escape from previous metagenomic studies. Furthermore, a comparative analysis of the protein repertoire with related species indicated that the lineage has independently undergone reductive genome evolution to a similar extent as

Indexed as

GeographyPhylogenyBase SequenceCyanobacteriaDinoflagellidaDNA Barcoding, TaxonomicGenome, BacterialGenomicsLikelihood FunctionsMetagenomicsSingle-Cell AnalysisSymbiosiscyanobacteriadinoflagellatemetagenomicssingle-cell genomicssymbiosis

Identifiers

PMID31235587
PMCPMC6689939
OpenAlexW2954740014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.