ArticleGenes2019
Genome-Wide Identification and Analysis of Class III Peroxidases in Allotetraploid Cotton (
Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
13 citing papers in PubMed, 20 citations in OpenAlex.
- Identification and expression analysis of apple CYP family genes in different rootstock-scion combination.BMC plant biology · 2025Article
- Genome-wide identification of peroxidase genes and functional analysis of MtPRX76 on lignin synthesis in Medicago truncatula.Functional & integrative genomics · 2025Article
- Comparative analysis of POD gene family and expression differentiation under NaCl, HBMC genomics · 2025Article
- Isolation and identification of core-genes in barley roots under low phosphorus stress.Molecular biology reports · 2025Article
- Molecular characterization and expression pattern of Rubisco activase gene GhRCAβ2 in upland cotton (Gossypium hirsutum L.).Genes & genomics · 2024Article
- The resilient cotton plant: uncovering the effects of stresses on secondary metabolomics and its underlying molecular mechanisms.Functional & integrative genomics · 2023Review
- Genome-wide identification of the class III peroxidase gene family of sugarcane and its expression profiles under stresses.Frontiers in plant science · 2023Article
- Characterization of Peroxidase and Laccase Gene Families and In Silico Identification of Potential Genes Involved in Upstream Steps of Lignan Formation in Sesame.Life (Basel, Switzerland) · 2022Article
- Genome-wide identification and analysis of class III peroxidases in Betula pendula.BMC genomics · 2021Article
- Regulatory Network of Cotton Genes in Response to Salt, Drought and Wilt Diseases (Frontiers in plant science · 2021Review
- Automatic Prediction and Annotation: There Are Strong Biases for Multigenic Families.Frontiers in genetics · 2021Article
- Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L).BMC genomics · 2020Article
- Cell Wall Proteins Play Critical Roles in Plant Adaptation to Phosphorus Deficiency.International journal of molecular sciences · 2019Review
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Class III peroxidases (PODs), commonly known as secretable class III plant peroxidases, are plant-specific enzymes that play critical roles in not only plant growth and development but also the responses to biotic and abiotic stress. In this study, we identified 198 nonredundant POD genes, designated GhPODs, with 180 PODs being predicted to secrete into apoplast. These POD genes were divided into 10 sub-groups based on their phylogenetic relationships. We performed systematic bioinformatic analysis of the POD genes, including analysis of gene structures, phylogenetic relationships, and gene expression profiles. The GhPODs are unevenly distributed on both upland cotton sub-genome A and D chromosomes. Additionally, these genes have undergone 15 segmental and 12 tandem duplication events, indicating that both segmental and tandem duplication contributed to the expansion of the POD gene family in upland cotton. Ka/Ks analysis suggested that most duplicated GhPODs experienced negative selection, with limited functional divergence during the duplication events. High-throughput RNA-seq data indicated that most highly expressed genes might play significant roles in root, stem, leaf, and fiber development. Under K or P deficiency conditions, PODs showed different expression patterns in cotton root and leaf. This study provides useful information for further functional analysis of the POD gene family in upland cotton.
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Registered trials
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