Evidence map›Paper›PMID 31234367›Full record

ArticleMarine drugs2019

Application of Bioactive Thermal Proteome Profiling to Decipher the Mechanism of Action of the Lipid Lowering 13

Ana Carrasco Del Amor, Sara Freitas, Ralph Urbatzka, Olatz Fresnedo, Susana Cristobal

Open access · goldAbstract read
In one paragraph

Article in Marine drugs, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ana Carrasco Del AmorDepartment of Clinical and Experimental Medicine, Cell Biology, Faculty of Medicine, Linköping University, 581 85 Linköping, Sweden. ana.carrasco@liu.se.ORCID 0000-0002-5145-9327
Sara FreitasCIIMAR, Interdisciplinary Centre of Marine and Environmental Research, 4450-208 Matosinhos, Portugal. freitas.srf.09@gmail.com.
Ralph UrbatzkaCIIMAR, Interdisciplinary Centre of Marine and Environmental Research, 4450-208 Matosinhos, Portugal. rurbatzka@ciimar.up.pt.ORCID 0000-0001-7476-9195
Olatz FresnedoDepartment of Physiology, Faculty of Medicine and Nursing, University of the Basque Country UPV/EHU, 48940 Leioa, Spain. olatz.fresnedo@ehu.eus.
Susana CristobalDepartment of Clinical and Experimental Medicine, Cell Biology, Faculty of Medicine, Linköping University, 581 85 Linköping, Sweden. susana.cristobal@liu.se.ORCID 0000-0002-3894-2218
Centro Interdisciplinar de Investigação Marinha e AmbientalLinköping University · SEUniversity of the Basque Country · ES

Funding

Basque Government grant IT-971-16FCT Foundation of Science and Technology, Portugal ERA-MBT/0001/2015FCT grants SFRH/BPD 112287/2015SFRH/BD SFRH/BD/116009/2016Svenska Forskningsrådet Formas 2016-02004
6 · The paper itself

Abstract

The acceleration of the process of understanding the pharmacological application of new marine bioactive compounds requires identifying the compound protein targets leading the molecular mechanisms in a living cell. The thermal proteome profiling (TPP) methodology does not fulfill the requirements for its application to any bioactive compound lacking chemical and functional characterization. Here, we present a modified method that we called bTPP for bioactive thermal proteome profiling that guarantees target specificity from a soluble subproteome. We showed that the precipitation of the microsomal fraction before the thermal shift assay is crucial to accurately calculate the melting points of the protein targets. As a probe of concept, the protein targets of 13

Indexed as

Aquatic OrganismsBiological AssayCell Line, TumorCyanobacteriaHep G2 CellsHumansLipidsPheophytinsProteomeProteomicsLipidsPheophytinsProteomebioactive compoundlabel-free quantitative proteomicsmarine biodiscoverymechanisms of actionthermal proteome profiling

Identifiers

PMID31234367
PMCPMC6627572
OpenAlexW2950618807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.