Evidence map›Paper›PMID 31233657›Full record

ArticleChembiochem : a European journal of chemical biology2019

Synthetic Phosphodiester-Linked 4-Amino-4-deoxy-l-arabinose Derivatives Demonstrate that ArnT is an Inverting Aminoarabinosyl Transferase.

Charlotte Olagnon, Julia Monjaras Feria, Clemens Grünwald-Gruber, Markus Blaukopf, Miguel A Valvano, Paul Kosma

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Synthesis ofBeilstein journal of organic chemistry · 2020
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Charlotte OlagnonDepartment of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, 1190, Vienna, Austria.
Julia Monjaras FeriaWellcome-Wolfson Institute of Experimental Medicine, Queen's University Belfast, 97 Lisburn Road, BT9 7BL, Belfast, UK.
Clemens Grünwald-GruberDepartment of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-6097-8348
Markus BlaukopfDepartment of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0002-9649-1064
Miguel A ValvanoWellcome-Wolfson Institute of Experimental Medicine, Queen's University Belfast, 97 Lisburn Road, BT9 7BL, Belfast, UK.ORCID 0000-0001-8229-3641
Paul KosmaDepartment of Chemistry, University of Natural Resources and Life Sciences-Vienna, Muthgasse 18, 1190, Vienna, Austria.ORCID 0000-0001-5342-7161
BOKU University · ATQueen's University Belfast · GB

Funding

Austrian Science Fund FWF P 28826_N26
6 · The paper itself

Abstract

4-Amino-4-deoxy-l-arabinopyranose (Ara4N) residues have been linked to antibiotic resistance due to reduction of the negative charge in the lipid A and core regions of the bacterial lipopolysaccharide (LPS). To study the enzymatic transfer of Ara4N onto lipid A, which is catalysed by the ArnT transferase, we chemically synthesised a series of anomeric phosphodiester-linked lipid Ara4N derivatives containing linear aliphatic chains as well as E- and Z-configured monoterpene units. Coupling reactions were based on sugar-derived H-phosphonates, followed by oxidation and global deprotection. The enzymatic Ara4N transfer was performed in vitro with crude membranes from a deep-rough mutant from Escherichia coli as acceptor. Product formation was detected by TLC and LC-ESI-QTOF mass spectrometry. Out of seven analogues tested, only the α-neryl derivative was accepted by the Burkholderia cenocepacia ArnT protein, leading to substitution of the Kdo

Indexed as

Amino SugarsBacterial ProteinsBurkholderia cenocepaciaEnzyme AssaysEscherichia coliLipid AOrganophosphatesOrganophosphonatesPentosyltransferasesSubstrate Specificity4-amino-4-deoxyarabinoseAmino SugarsBacterial ProteinsLipid AOrganophosphatesOrganophosphonatesPentosyltransferasesBurkholderiacarbohydratesglycolipidsglycosyl transferaseslipopolysaccharide

Identifiers

PMID31233657
PMCPMC6902282
OpenAlexW2951989015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.