Evidence map›Paper›PMID 31233504›Full record

ArticlePLoS genetics2019

Parallel evolution leading to impaired biofilm formation in invasive Salmonella strains.

Keith D MacKenzie, Yejun Wang, Patrick Musicha, Elizabeth G Hansen, Melissa B Palmer, Dakoda J Herman, Nicholas A Feasey, Aaron P White

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Exploring bet-hedging inmSystems · 2026
    Article
  4. Review
  5. Article
  6. Comparative Biofilmomics of Antimicrobial-ResistantAnimals : an open access journal from MDPI · 2026
    Review
  7. Sensitivity of dairy calfMicrobiology spectrum · 2024
    Article
  8. Article
  9. A Single Base Change in theMicroorganisms · 2024
    Article
  10. Functional role of the biofilm regulator CsgD inFrontiers in cellular and infection microbiology · 2024
    Article
  11. Article
  12. Article
  13. Invasive Non-TyphoidalInfection and immunity · 2023
    Article
  14. Article
  15. International journal of molecular sciences · 2022
    Review
  16. Evolution of amBio · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 5 countries.

Keith D MacKenzieVaccine and Infectious Disease Organization-International Vaccine Centre, Saskatoon, SK., Canada.ORCID 0000-0003-2568-6005
Yejun WangDepartment of Cell Biology and Genetics, Shenzhen University Health Science Center, Guangdong, China.
Patrick MusichaCentre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, United Kingdom.ORCID 0000-0001-7780-2173
Elizabeth G HansenVaccine and Infectious Disease Organization-International Vaccine Centre, Saskatoon, SK., Canada.ORCID 0000-0003-1133-8093
Melissa B PalmerVaccine and Infectious Disease Organization-International Vaccine Centre, Saskatoon, SK., Canada.ORCID 0000-0001-8401-0860
Dakoda J HermanVaccine and Infectious Disease Organization-International Vaccine Centre, Saskatoon, SK., Canada.ORCID 0000-0003-1397-7198
Nicholas A FeaseyMalawi Liverpool Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.ORCID 0000-0003-4041-1405
Aaron P WhiteVaccine and Infectious Disease Organization-International Vaccine Centre, Saskatoon, SK., Canada.ORCID 0000-0003-2746-5265
University of Saskatchewan · CAUniversity of Liverpool · GBShenzhen University Health Science Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pathogenic Salmonella strains that cause gastroenteritis are able to colonize and replicate within the intestines of multiple host species. In general, these strains have retained an ability to form the rdar morphotype, a resistant biofilm physiology hypothesized to be important for Salmonella transmission. In contrast, Salmonella strains that are host-adapted or even host-restricted like Salmonella enterica serovar Typhi, tend to cause systemic infections and have lost the ability to form the rdar morphotype. Here, we investigated the rdar morphotype and CsgD-regulated biofilm formation in two non-typhoidal Salmonella (NTS) strains that caused invasive disease in Malawian children, S. Typhimurium D23580 and S. Enteritidis D7795, and compared them to a panel of NTS strains associated with gastroenteritis, as well as S. Typhi strains. Sequence comparisons combined with luciferase reporter technology identified key SNPs in the promoter region of csgD that either shut off biofilm formation completely (D7795) or reduced transcription of this key biofilm regulator (D23580). Phylogenetic analysis showed that these SNPs are conserved throughout the African clades of invasive isolates, dating as far back as 80 years ago. S. Typhi isolates were negative for the rdar morphotype due to truncation of eight amino acids from the C-terminus of CsgD. We present new evidence in support of parallel evolution between lineages of nontyphoidal Salmonella associated with invasive disease in Africa and the archetypal host-restricted invasive serovar; S. Typhi. We hypothesize that the African invasive isolates are becoming human-adapted and 'niche specialized' with less reliance on environmental survival, as compared to gastroenteritis-causing isolates.

Indexed as

Biological EvolutionAfricaBiofilmsChildGastroenteritisHumansPhylogenyPolymorphism, Single NucleotideSalmonella InfectionsSalmonella typhimuriumTrans-ActivatorsTrans-Activators

Identifiers

PMID31233504
PMCPMC6611641
OpenAlexW2949157136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.