Evidence map›Paper›PMID 31231084›Full record

ArticleThe Journal of veterinary medical science2019

Genetic characteristics of emerging Salmonella enterica serovar Agona strains isolated from humans in the prior period to occurrence of the serovar shift in broilers.

Yasushi Torii, Eiji Yokoyama, Misaki Seki, Hiroaki Shigemura, Taichiro Ishige, Keita Yanagimoto, Kosei Uematsu, Naoshi Ando, Tsutomu Fujimaki, Satoshi Murakami

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In one paragraph

Article in The Journal of veterinary medical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Characterization ofPathogens (Basel, Switzerland) · 2020
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yasushi ToriiLaboratory of Animal Health, Department of Animal Science, Tokyo University of Agriculture, Atsugi, Kanagawa 243-0034, Japan.
Eiji YokoyamaDivision of Bacteriology, Chiba prefectural Institute of Public Health, Chiba, Chiba 260-8715, Japan.
Misaki SekiLaboratory of Animal Health, Department of Animal Science, Tokyo University of Agriculture, Atsugi, Kanagawa 243-0034, Japan.
Hiroaki ShigemuraDivision of Pathology and Bacteriology, Department of Health Science, Fukuoka Institute of Health and Environmental Sciences, Dazaifu, Fukuoka 818-0135, Japan.
Taichiro IshigeGenome Research Center, Tokyo University of Agriculture, Setagaya, Tokyo 256-0054, Japan.
Keita YanagimotoDepartment of Microbiology, Yamanashi Institute of Public Health and Environments, Kofu, Yamanashi 400-0027, Japan.
Kosei UematsuDepartment of Microbiology, Yamanashi Institute of Public Health and Environments, Kofu, Yamanashi 400-0027, Japan.
Naoshi AndoDivision of Bacteriology, Chiba prefectural Institute of Public Health, Chiba, Chiba 260-8715, Japan.
Tsutomu FujimakiYamanashi Meat Hygiene Inspection Laboratory, Fuefuki, Yamanashi 406-0034, Japan.
Satoshi MurakamiLaboratory of Animal Health, Department of Animal Science, Tokyo University of Agriculture, Atsugi, Kanagawa 243-0034, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our previous studies found that a dominant serovar of Salmonella enterica isolates from three farms raising broilers in 2014 and 2015 was serovar Agona and the number of Infantis isolates decreased (the serovar shift). In this study, 52 S. Agona strains which isolated between 1993 and 2008, were compared to the serovar shift clone by molecular epidemiology and phylogenetic analyses, using pulsed field gel electrophoresis and whole genome sequence analyses. Of the 52 strains, one strain isolated from a human case in 1995 was genetically identical to the serovar shift clone, even though it was isolated prior to the serovar shift. These results suggested that the S. Agona serovar shift clone had existed in a source other than chicken penetrated chicken population.

Indexed as

ChickensAnimalsCommunicable Diseases, EmergingHumansJapanPoultry DiseasesSalmonella entericaSalmonella InfectionsSalmonella Infections, AnimalSeroepidemiologic StudiesSerotypingpulsed field gel electrophoresisSalmonella Agonaserovar shift clonewhole genome sequencing

Identifiers

PMID31231084
PMCPMC6715908

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.