Evidence map›Paper›PMID 31230720›Full record

ArticleAmerican journal of human genetics2019

The Genomics of Arthrogryposis, a Complex Trait: Candidate Genes and Further Evidence for Oligogenic Inheritance.

Davut Pehlivan, Yavuz Bayram, Nilay Gunes, Zeynep Coban Akdemir, Anju Shukla, Tatjana Bierhals, Burcu Tabakci, Yavuz Sahin, Alper Gezdirici, Jawid M Fatih and 37 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Fetal hydrops and the Incremental yield of Next-generation sequencing over standard prenatal Diagnostic testing (FIND) study: prospective cohort study and meta-analysis.Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology · 2021
    Pooled it
  2. Trial
  3. Article
  4. Review
  5. Expanding the Clinical and Molecular Spectrum ofmedRxiv : the preprint server for health sciences · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Biallelic variants in theFrontiers in genetics · 2025
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. New evidence supportsFrontiers in neurology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 19 institutions in 5 countries.

Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Section of Pediatric Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Nilay GunesDepartment of Pediatric Genetics, Istanbul University-Cerrahpasa Medical Faculty, Istanbul 34096, Turkey.
Zeynep Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Anju ShuklaDepartment of Medical Genetics, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal 576104, India.
Tatjana BierhalsInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, Martinistraße 52, Hamburg 20246, Germany.
Burcu TabakciDepartment of Pediatric Genetics, Marmara University Medical School, Istanbul 34854, Turkey.
Yavuz SahinDepartment of Medical Genetics, Necip Fazıl City Hospital, Kahramanmaras 46050, Turkey.
Alper GezdiriciDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul 34303, Turkey.
Jawid M FatihDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Elif Yilmaz GulecDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul 34303, Turkey.
Gozde YesilDepartment of Medical Genetics, Bezmi Alem Vakif University Faculty of Medicine, Istanbul 34093, Turkey.
Jaya PunethaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Zeynep OcakDepartment of Medical Genetics, Kanuni Sultan Suleyman Training and Research Hospital, Istanbul 34303, Turkey.
Christopher M GrochowskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Ender KaracaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Hatice Mutlu AlbayrakDepartment of Pediatrics, Division of Pediatric Genetics, Faculty of Medicine, Ondokuz Mayıs University, Samsun 55270, Turkey.
Periyasamy RadhakrishnanDepartment of Medical Genetics, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal 576104, India.
Haktan Bagis ErdemDepartment of Medical Genetics, University of Health Sciences, Diskapi Yildirim Beyazit Training and Research Hospital, Ankara 06110, Turkey.
Ibrahim SahinDepartment of Medical Genetics, University of Erzurum, School of Medicine, Erzurum 25240, Turkey.
Timur YildirimDepartment of Orthopedics and Traumatology, Baltalimani Bone Diseases Training and Research Hospital, Istanbul 34470, Turkey.
Ilhan A BayhanDepartment of Orthopedics and Traumatology, Baltalimani Bone Diseases Training and Research Hospital, Istanbul 34470, Turkey.
Aysegul BursaliDepartment of Orthopedics and Traumatology, Baltalimani Bone Diseases Training and Research Hospital, Istanbul 34470, Turkey.
Muhsin ElmasDepartment of Medical Genetics, Afyon Kocatepe University, School of Medicine, Afyon 03218, Turkey.
Zafer YukselMedical Genetics Clinic, Mersin Women and Children Hospital, Mersin 33330, Turkey.
Ozturk OzdemirDepartment of Medical Genetics, Faculty of Medicine, Onsekiz Mart University, Canakkale 17000, Turkey.
Fatma SilanDepartment of Medical Genetics, Faculty of Medicine, Onsekiz Mart University, Canakkale 17000, Turkey.
Onur YildizDepartment of Medical Genetics, Faculty of Medicine, Onsekiz Mart University, Canakkale 17000, Turkey.
Osman YesilbasDivision of Critical Care Medicine, Department of Pediatrics, University of Health Sciences, Van Training and Research Hospital, Van 65130, Turkey.
Sedat IsikayDepartment of Physiotherapy and Rehabilitation, Hasan Kalyoncu University, School of Health Sciences, Gaziantep 27000, Turkey.
Burhan BaltaDepartment of Medical Genetics, Kayseri Training and Research Hospital, Kayseri 38080, Turkey.
Shen GuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Harsha DoddapaneniHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Jianhong HuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Baylor-Hopkins Center for Mendelian Genomics
Eric BoerwinkleHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Human Genetics Center, University of Texas Health Science Center at Houston School of Public Health, Houston, TX, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Konstantinos TsiakasDepartment of Pediatrics, University Medical Center Hamburg-Eppendorf, Hamburg, 20246, Germany.
Maja HempelInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, Martinistraße 52, Hamburg 20246, Germany.
Katta Mohan GirishaDepartment of Medical Genetics, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal 576104, India.
Davut GulDepartment of Medical Genetics, Gulhane Military Medical School, Ankara 06010, Turkey.
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Nursel H ElciogluDepartment of Pediatric Genetics, Marmara University Medical School, Istanbul 34854, Turkey; Eastern Mediterranean University School of Medicine, Cyprus, Mersin 10, Turkey.
Beyhan TuysuzDepartment of Pediatric Genetics, Istanbul University-Cerrahpasa Medical Faculty, Istanbul 34096, Turkey.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA. Electronic address: jlupski@bcm.edu.
Baylor College of Medicine · USÇanakkale Onsekiz Mart Üniversitesi · TRİstanbul Kanuni Sultan Süleyman Eğitim ve Araştırma Hastanesi · TRManipal Academy of Higher Education · INUniversity Medical Center Hamburg-Eppendorf · DEIstanbul University-Cerrahpaşa · TRMarmara University · TRAfyon Kocatepe University · TRBezmiâlem Vakıf Üniversitesi · TRDışkapı Yıldırım Beyazıt Eğitim ve Araştırma Hastanesi · TRErzurum Technical University · TRHasan Kalyoncu University · TRIcahn School of Medicine at Mount Sinai · USKayseri Eğitim ve Araştırma Hastanesi · TROndokuz Mayıs University · TRSağlık Bilimleri Üniversitesi · TRŞanlıurfa Mehmet Akif İnan Eğitim ve Araştırma Hastanesi · TRTexas Children's Hospital · USTurkish Armed Forces · TR

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Mutidisciplinary Training;Brain Disorders &DevelopmentT32NS043124 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI SWANN, JOHN WILLIAM · 2002 to 2021
$4.6M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS UM1 HG006542NINDS NIH HHS R35 NS105078NINDS NIH HHS T32 NS043124
6 · The paper itself

Abstract

Arthrogryposis is a clinical finding that is present either as a feature of a neuromuscular condition or as part of a systemic disease in over 400 Mendelian conditions. The underlying molecular etiology remains largely unknown because of genetic and phenotypic heterogeneity. We applied exome sequencing (ES) in a cohort of 89 families with the clinical sign of arthrogryposis. Additional molecular techniques including array comparative genomic hybridization (aCGH) and Droplet Digital PCR (ddPCR) were performed on individuals who were found to have pathogenic copy number variants (CNVs) and mosaicism, respectively. A molecular diagnosis was established in 65.2% (58/89) of families. Eleven out of 58 families (19.0%) showed evidence for potential involvement of pathogenic variation at more than one locus, probably driven by absence of heterozygosity (AOH) burden due to identity-by-descent (IBD). RYR3, MYOM2, ERGIC1, SPTBN4, and ABCA7 represent genes, identified in two or more families, for which mutations are probably causative for arthrogryposis. We also provide evidence for the involvement of CNVs in the etiology of arthrogryposis and for the idea that both mono-allelic and bi-allelic variants in the same gene cause either similar or distinct syndromes. We were able to identify the molecular etiology in nine out of 20 families who underwent reanalysis. In summary, our data from family-based ES further delineate the molecular etiology of arthrogryposis, yielded several candidate disease-associated genes, and provide evidence for mutational burden in a biological pathway or network. Our study also highlights the importance of reanalysis of individuals with unsolved diagnoses in conjunction with sequencing extended family members.

Indexed as

DNA Copy Number VariationsGenetic MarkersMutationAdolescentAdultArthrogryposisChildChild, PreschoolCohort StudiesConnectinExome SequencingFemaleGenomicsGestational AgeHumansInfantConnectinERGIC1 protein, humanGenetic MarkersMYOM2 protein, humanRyanodine Receptor Calcium Release ChannelRYR3 protein, humanVesicular Transport Proteinsabsence of heterozygosityarthrogryposisES reanalysisidentity-by-descentjoint contracturemultilocus pathogenic variationneuromuscular diseasetrio-exome

Identifiers

PMID31230720
PMCPMC6612529
OpenAlexW2950856526

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.