Evidence map›Paper›PMID 31227770›Full record

ArticleScientific reports2019

Open chromatin dynamics in prosensory cells of the embryonic mouse cochlea.

Brent A Wilkerson, Alex D Chitsazan, Leah S VandenBosch, Matthew S Wilken, Thomas A Reh, Olivia Bermingham-McDonogh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Long-rangeProceedings of the National Academy of Sciences of the United States of America · 2024
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  5. Sufu- and Spop-mediated regulation of Gli2 is essential for the control of mammalian cochlear hair cell differentiation.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Brent A WilkersonDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA.
Alex D ChitsazanDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA.
Leah S VandenBoschDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA.
Matthew S WilkenDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA.
Thomas A RehDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA.
Olivia Bermingham-McDonoghDepartment of Biological Structure, University of Washington, Box 357420, Seattle, WA, 98195, USA. oliviab@uw.edu.
University of Washington · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Auditory Neuroscience Traning ProgramT32DC005361 · NIDCD · UNIVERSITY OF WASHINGTON · PI Adrian KC Lee, DAVID J PERKEL · 2002 to 2026
$8.8M
Supplement to EY021482 to carry out a screen for retinal regeneration using CRISPR-Cas9 gene activation.R01EY021482 · NEI · UNIVERSITY OF WASHINGTON · PI THOMAS A REH · 2011 to 2026
$6.3M
INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
Cis regulatory elements in the inner earR21DC014768 · NIDCD · UNIVERSITY OF WASHINGTON · PI BERMINGHAM-MCDONOGH, OLIVIA MARY, REH, THOMAS A · 2016 to 2017
$423k
Mapping cis-acting elements enhancing prosensory gene expressionF32DC016480 · NIDCD · UNIVERSITY OF WASHINGTON · PI WILKERSON, BRENT ALLEN · 2017 to 2018
$118k
NEI NIH HHS R01 EY021482NICHD NIH HHS T32 HD007183NIDCD NIH HHS F32 DC016480NIDCD NIH HHS R21 DC014768NIDCD NIH HHS T32 DC005361NIGMS NIH HHS T32 GM007270U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) T32HD007183
6 · The paper itself

Abstract

Hearing loss is often due to the absence or the degeneration of hair cells in the cochlea. Understanding the mechanisms regulating the generation of hair cells may therefore lead to better treatments for hearing disorders. To elucidate the transcriptional control mechanisms specifying the progenitor cells (i.e. prosensory cells) that generate the hair cells and support cells critical for hearing function, we compared chromatin accessibility using ATAC-seq in sorted prosensory cells (Sox2-EGFP

Indexed as

AnimalsChromatinCochleaEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalGene Regulatory NetworksGreen Fluorescent ProteinsHair Cells, AuditoryMicePolymorphism, Single NucleotideSensory Receptor CellsSOXB1 Transcription FactorsTranscription FactorsChromatinenhanced green fluorescent proteinGreen Fluorescent ProteinsSox2 protein, mouseSOXB1 Transcription FactorsTranscription Factors

Identifiers

PMID31227770
PMCPMC6588700
OpenAlexW2949821361

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.