Evidence map›Paper›PMID 31227739›Full record

ArticleScientific reports2019

Molecular phenotyping of the surfaceome of migratory chondroprogenitors and mesenchymal stem cells using biotinylation, glycocapture and quantitative LC-MS/MS proteomic analysis.

Csaba Matta, David J Boocock, Christopher R Fellows, Nicolai Miosge, James E Dixon, Susan Liddell, Julia Smith, Ali Mobasheri

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Introduction: Methods for Studying the Plasma Membrane and the Surfaceome.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  9. The role of mesenchymal cells in cholangiocarcinoma.Disease models & mechanisms · 2024
    Article
  10. Review
  11. Article
  12. CaInternational journal of molecular sciences · 2023
    Review
  13. Review
  14. Cell Surface Biotinylation Using Furan Cross-Linking Chemistry.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Csaba MattaDepartment of Anatomy, Histology and Embryology, Faculty of Medicine, University of Debrecen, Debrecen, H-4032, Hungary. matta.csaba@med.unideb.hu.ORCID http://orcid.org/0000-0002-9678-7420
David J BoocockJohn van Geest Cancer Research Centre, Nottingham Trent University, Nottingham, NG11 8NS, United Kingdom.ORCID http://orcid.org/0000-0002-7333-3549
Christopher R FellowsDepartment of Veterinary Preclinical Sciences, School of Veterinary Medicine, Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, GU2 7AL, United Kingdom.
Nicolai MiosgeDepartment of Prosthodontics, Tissue Regeneration Work Group, Georg August University, Göttingen, Germany.
James E DixonSchool of Pharmacy, Wolfson Centre for Stem Cells, Tissue Engineering, and Modelling, Centre of Biomolecular Sciences, University of Nottingham, Nottingham, NG7 2RD, United Kingdom.
Susan LiddellSchool of Biosciences, University of Nottingham, Sutton Bonington, LE12 5RD, United Kingdom.
Julia SmithBruker UK Limited, Coventry, CV4 9GH, United Kingdom.
Ali MobasheriCentre for Sport, Exercise and Osteoarthritis Research Versus Arthritis, Queen's Medical Centre, Nottingham, NG7 2UH, United Kingdom. ali.mobasheri.manuscripts@gmail.com.

Funding

Arthritis Research UK 20194
6 · The paper itself

Abstract

The complement of cell surface proteins, collectively referred to as the surfaceome, is a useful indicator of normal differentiation processes, and the development of pathologies such as osteoarthritis (OA). We employed biochemical and proteomic tools to explore the surfaceome and to define biomarkers in chondrogenic progenitor cells (CPC) derived from human OA knee articular cartilage. These cells have great therapeutic potential, but their unexplored biology limits their clinical application. We performed biotinylation combined with glycocapture and high throughput shotgun proteomics to define the surface proteome of human bone marrow mesenchymal stem cells (MSCs) and human CPCs. We prepared cell surface protein-enriched fractions from MSCs and CPCs, and then a proteomic approach was used to compare and evaluate protein changes between undifferentiated MSCs and CPCs. 1256 proteins were identified in the study, of which 791 (63%) were plasma membrane, cell surface or extracellular matrix proteins. Proteins constituting the surfaceome were annotated and categorized. Our results provide, for the first time, a repository of quantitative proteomic data on the surfaceome of two closely related cell types relevant to cartilage biology and OA. These results may provide novel insights into the transformation of the surfaceome during chondrogenic differentiation and phenotypic changes during OA development.

Indexed as

BiotinylationCartilage, ArticularCell DifferentiationCells, CulturedChondrocytesChondrogenesisChromatography, LiquidHumansMembrane ProteinsMesenchymal Stem CellsOsteoarthritis, KneePhenotypeProteomeProteomicsStem CellsTandem Mass SpectrometryMembrane ProteinsProteome

Identifiers

PMID31227739
PMCPMC6588563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.