Evidence map›Paper›PMID 31227734›Full record

ArticleScientific reports2019

Transcriptome analysis provides insights into the stress response crosstalk in apple (Malus × domestica) subjected to drought, cold and high salinity.

Xingliang Li, Minji Li, Beibei Zhou, Yuzhang Yang, Qinping Wei, Junke Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
7.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

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  11. Comparative Transcriptomics of Multi-Stress Responses inInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xingliang LiBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China.
Minji LiBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China.
Beibei ZhouBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China.
Yuzhang YangBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China.
Qinping WeiBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China.
Junke ZhangBeijing Engineering Research Center for Deciduous Fruit Trees, Beijing Academy of Forestry and Pomology Sciences, Beijing, 100093, P.R. China. zhangjk@nwsuaf.edu.cn.
Beijing Academy of Agricultural and Forestry Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought, cold, and high salinity are three major abiotic stresses effecting apple tree growth and fruit production. Understanding the genetic mechanisms of crosstalk between stress responses signalling networks and identifying the genes involved in apple has potential importance for crop improvement and breeding strategies. Here, the transcriptome profiling analysis of in vitro-grown apple plants subjected to drought, cold and high salinity stress, showed a total of 377 upregulated and 211 downregulated common differentially expressed genes (DEGs) to all 3 stress treatments compared with the control. Gene Ontology (GO) analysis indicated that these common DEGs were enriched in 'metabolic process' under the 'biological process' category, as well as in 'binding' and 'catalytic activity' under the 'molecular function' category. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that common DEGs were mainly belong to the 'biological functions' category and 17 DEGs were identified in 'environmental information processing' sub-category which may act as signal transduction components in response crosstalk regulation. Overexpression of 5 upregulated genes individually, out of these 17 common DEGs in apple calli promoted the consistent upregulation of DREB6, CBF1 and ZAT10 and increased the mass weight and antioxidase ability, implying these five common DEGs involved in multiple pathways and improved comprehensive resistance to stress.

Indexed as

Cold TemperatureDroughtsGene Expression ProfilingSalinityStress, PhysiologicalMalus

Identifiers

PMID31227734
PMCPMC6588687
OpenAlexW2949578413

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.