ArticleGenome research2019
Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish.
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Article in Genome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.
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56citing papers in PubMed
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Who cites it
56 citing papers in PubMed, 95 citations in OpenAlex.
- Beyond codon optimality: codon pairs regulate mRNA stability dependent on translation.bioRxiv : the preprint server for biology · 2026Article
- Single-molecule mbioRxiv : the preprint server for biology · 2026Article
- Bridging maternal effects and epitranscriptomics: A novel perspective in developmental biology.Developmental dynamics : an official publication of the American Association of Anatomists · 2026Review
- Type II Alveolar Epithelial Cells Promote Sepsis-Induced Immunosuppression in Alveolar Macrophages via Exosomal lncRNA Rmrp Release.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- The syntenic long non-coding RNA DANCR is an essential regulator of zebrafish development and a human melanoma oncogene.PLoS genetics · 2025Article
- CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of maternal-to-zygotic transition in teleosts.The EMBO journal · 2025Article
- Transposon insertion causes ctnnb2 transcript instability that results in the maternal effect zebrafish ichabod (ich) mutation.Biochimica et biophysica acta. Gene regulatory mechanisms · 2025Article
- Quantitative modeling of mRNA degradation reveals tempo-dependent mRNA clearance in early embryos.Nucleic acids research · 2025Article
- H3K4me2 distinguishes a distinct class of enhancers during the maternal-to-zygotic transition.PLoS biology · 2025Article
- The regulatory landscape of 5' UTRs in translational control during zebrafish embryogenesis.Developmental cell · 2025Article
- The maternal-to-zygotic transition: reprogramming of the cytoplasm and nucleus.Nature reviews. Genetics · 2025Review
- Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.Nature communications · 2025Article
- Article
- LncLSTA: a versatile predictor unveiling subcellular localization of lncRNAs through long-short term attention.Bioinformatics advances · 2025Article
- Ribosomal RNA Depletion for Poly(A)-Tail-Independent Quantification of Genome Activation.Methods in molecular biology (Clifton, N.J.) · 2025Article
- NaP-TRAP reveals the regulatory grammar in 5'UTR-mediated translation regulation during zebrafish development.Nature communications · 2024Article
- Critical role of Spatio-Temporally Regulated Maternal RNAs in Zebrafish Embryogenesis.bioRxiv : the preprint server for biology · 2024Article
- Enhanced RNA-targeting CRISPR-Cas technology in zebrafish.bioRxiv : the preprint server for biology · 2024Article
- UPF1 regulates mRNA stability by sensing poorly translated coding sequences.Cell reports · 2024Article
- miR-430 regulates zygotic mRNA during zebrafish embryogenesis.Genome biology · 2024Article
Corrections and comments
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Authors and funding
16 authors at 7 institutions in 1 country.
Charles E Vejnar *Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0002-7132-4534
Mario Abdel Messih *Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0003-2887-5741
Carter M Takacs *Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Valeria Yartseva *Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Panos Oikonomou *Department of Systems Biology, Columbia University, New York, New York 10032, USA.
Romain ChristianoDepartment of Genetics and Complex Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115, USA.
Marlon StoeckiusDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Stephanie LauDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Miler T LeeDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.ORCID 0000-0003-0933-0551
Jean-Denis BeaudoinDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Damir MusaevDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Hiba Darwich-CodoreDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Tobias C WaltherDepartment of Genetics and Complex Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115, USA.
Saeed TavazoieDepartment of Biochemistry and Molecular Biophysics, and Department of Systems Biology, Columbia University, New York, New York 10032, USA.
Daniel CifuentesDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Antonio J GiraldezDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut 06510, USA.
Yale University · USColumbia University · USBoston University · USBroad Institute · USHarvard University · USUniversity of Pittsburgh · USYale Cancer Center · US
Funding
Molecular mechanisms of the maternal to zygotic transitionR35GM122580 · NIGMS · YALE UNIVERSITY · PI Antonio J Giraldez · 2017 to 2026
$8.1MPredictive Learning of Transcriptional NetworksR01HG003219 · NHGRI · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2004 to 2015
$3.7MMassively parallel mapping of all molecular interactions in a single tubeR01HG009065 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TAVAZOIE, SAEED F · 2015 to 2019
$3.2MFunctional analysis of the zebrafish genome through RNA-seq and ribosome profileR01HD074078 · NICHD · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J · 2012 to 2016
$2.3MMolecular mechanisms of microRNA mediated regulationR01GM102251 · NIGMS · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J · 2012 to 2015
$1.3MAnalysis of the Molecular Machinery of microRNA-processing pathwaysR00HD071968 · NICHD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CIFUENTES, DANIEL · 2016 to 2018
$747kDevelopment of RNA interference in zebrafishR21HD073768 · NICHD · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J · 2012 to 2013
$445kAnalysis of the Molecular Machinery of microRNA-processing pathwaysK99HD071968 · NICHD · YALE UNIVERSITY · PI CIFUENTES, DANIEL · 2013 to 2014
$217kHoward Hughes Medical InstituteNHGRI NIH HHS R01 HG003219NHGRI NIH HHS R01 HG009065NICHD NIH HHS K99 HD071968NICHD NIH HHS R00 HD071968NICHD NIH HHS R01 HD074078NICHD NIH HHS R21 HD073768NIGMS NIH HHS R01 GM102251NIGMS NIH HHS R35 GM122580
Abstract
Posttranscriptional regulation plays a crucial role in shaping gene expression. During the maternal-to-zygotic transition (MZT), thousands of maternal transcripts are regulated. However, how different
Indexed as
3' Untranslated RegionsGene Expression Regulation, DevelopmentalAmino Acid MotifsAnimalsBinding SitesMachine LearningModels, GeneticRegulatory Sequences, Ribonucleic AcidRNA-Binding ProteinsRNA StabilityZebrafishZygote3' Untranslated RegionsRegulatory Sequences, Ribonucleic AcidRNA-Binding Proteins
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.