Evidence map›Paper›PMID 31226949›Full record

ArticleBMC plant biology2019

Genome-wide identification of GRF transcription factors in soybean and expression analysis of GmGRF family under shade stress.

Feng Chen, Yingzeng Yang, Xiaofeng Luo, Wenguan Zhou, Yujia Dai, Chuan Zheng, Weiguo Liu, Wenyu Yang, Kai Shu

Abstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

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34citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  20. Genome-Wide Analysis of Flax (International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Feng ChenCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Yingzeng YangCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Xiaofeng LuoCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Wenguan ZhouCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Yujia DaiCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Chuan ZhengCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China.
Weiguo LiuInstitute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, 611130, China.
Wenyu YangInstitute of Ecological Agriculture, Sichuan Agricultural University, Chengdu, 611130, China.
Kai ShuCenter for Ecological and Environmental Sciences, Northwestern Polytechnical University, Xi'an, 710129, China. kshu@nwpu.edu.cn.ORCID http://orcid.org/0000-0003-4888-3001

Funding

National Key Research and Development Program of China 2017YFD0201300National Natural Science Foundation of China 31701064National Natural Science Foundation of China 31872804Sichuan Science and Technology Program 2018JZ0060
6 · The paper itself

Abstract

backgroundThe Growth-regulating factor (GRF) family encodes plant-specific transcription factors which contain two conserved domains, QLQ and WRC. Members of this family play vital roles in plant development and stress response processes. Although GRFs have been identified in various plant species, we still know little about the GRF family in soybean (Glycine max).

resultsIn the present study, 22 GmGRFs distributed on 14 chromosomes and one scaffold were identified by searching soybean genome database and were clustered into five subgroups according to their phylogenetic relationships. GmGRFs belonging to the same subgroup shared a similar motif composition and gene structure. Synteny analysis revealed that large-scale duplications played key roles in the expansion of the GmGRF family. Tissue-specific expression data showed that GmGRFs were strongly expressed in growing tissues, including the shoot apical meristems, developing seeds and flowers, indicating that GmGRFs play critical roles in plant growth and development. On the basis of expression analysis of GmGRFs under shade conditions, we found that all GmGRFs responded to shade stress. Most GmGRFs were down-regulated in soybean leaves after shade treatment.

conclusionsTaken together, this research systematically analyzed the characterization of the GmGRF family and its primary roles in soybean development and shade stress response. Further studies of the function of the GmGRFs in the growth, development and stress tolerance of soybean, especially under shade stress, will be valuable.

Indexed as

Chromosomes, PlantGene Expression Regulation, PlantGenome, PlantGlycine maxLightPlant ProteinsStress, PhysiologicalSyntenyTranscription FactorsTranscriptomePlant ProteinsTranscription FactorsGene familyGrowth-regulating factorLeaf sizeSeedShadeSoybean

Identifiers

PMID31226949
PMCPMC6588917

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.