Evidence map›Paper›PMID 31226930›Full record

ArticleBMC immunology2019

Longitudinal immunosequencing in healthy people reveals persistent T cell receptors rich in highly public receptors.

Nathaniel D Chu, Haixin Sarah Bi, Ryan O Emerson, Anna M Sherwood, Michael E Birnbaum, Harlan S Robins, Eric J Alm

Open access · goldAbstract read
In one paragraph

Article in BMC immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 59 citations in OpenAlex.

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  14. Dominant CD4Cell reports. Medicine · 2023
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  19. Inferring the T cell repertoire dynamics of healthy individuals.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nathaniel D ChuDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Haixin Sarah BiDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Ryan O EmersonAdaptive Biotechnologies, Seattle, WA, USA.
Anna M SherwoodAdaptive Biotechnologies, Seattle, WA, USA.
Michael E BirnbaumDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Harlan S RobinsAdaptive Biotechnologies, Seattle, WA, USA.
Eric J AlmDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. ejalm@mit.edu.
Massachusetts Institute of Technology · USAdaptive Biotechnologies (United States) · USFred Hutch Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe adaptive immune system maintains a diversity of T cells capable of recognizing a broad array of antigens. Each T cell's specificity for antigens is determined by its T cell receptors (TCRs), which together across all T cells form a repertoire of millions of unique receptors in each individual. Although many studies have examined how TCR repertoires change in response to disease or drugs, few have explored the temporal dynamics of the TCR repertoire in healthy individuals.

resultsHere we report immunosequencing of TCR β chains (TCRβ) from the blood of three healthy individuals at eight time points over one year. TCRβ repertoires of all peripheral-blood T cells and sorted memory T cells clustered clearly by individual, systematically demonstrating that TCRβ repertoires are specific to individuals across time. This individuality was absent from TCRβs from naive T cells, suggesting that the differences resulted from an individual's antigen exposure history, not genetic background. Many characteristics of the TCRβ repertoire (e.g., diversity, clonality) were stable across time, although we found evidence of T cell expansion dynamics even within healthy individuals. We further identified a subset of "persistent" TCRβs present across all time points. These receptors were rich in clonal and highly public receptors and may play a key role in immune system maintenance.

conclusionsOur results highlight the importance of longitudinal sampling of the immune system, providing a much-needed baseline for TCRβ dynamics in healthy individuals. Such a baseline will improve interpretation of changes in the TCRβ repertoire during disease or treatment.

Indexed as

Time FactorsAdaptive ImmunityBiodiversityCell DifferentiationCells, CulturedClonal Selection, Antigen-MediatedGenes, T-Cell Receptor betaHealthy VolunteersHigh-Throughput Nucleotide SequencingHumansImmunologic MemoryLymphocyte ActivationSpecies SpecificityT-LymphocytesT-Lymphocyte SubsetsHealthy controlsImmunosequencingMemory T cellNaive T cellPersistent receptorsPublic receptorsRepertoire sequencingT cell receptor

Identifiers

PMID31226930
PMCPMC6588944
OpenAlexW2952324549

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.