Evidence map›Paper›PMID 31226552›Full record

ArticleMolecular immunology2019

Salt bridge-forming residues positioned over viral peptides presented by MHC class I impacts T-cell recognition in a binding-dependent manner.

Wei Ji, Ling Niu, Weiyu Peng, Yongli Zhang, Hao Cheng, Feng Gao, Yi Shi, Jianxun Qi, George F Gao, William J Liu

Abstract read
In one paragraph

Article in Molecular immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Wei JiNHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China.
Ling NiuCAS Key Laboratory for Pathogenic Microbiology and Immunology, Chinese Academy of Sciences, Beijing 100101, China.
Weiyu PengNHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China.
Yongli ZhangSchool of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China.
Hao ChengResearch Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100101, China.
Feng GaoInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Yi ShiCAS Key Laboratory for Pathogenic Microbiology and Immunology, Chinese Academy of Sciences, Beijing 100101, China.
Jianxun QiNHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China.
George F GaoNHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China; CAS Key Laboratory for Pathogenic Microbiology and Immunology, Chinese Academy of Sciences, Beijing 100101, China; Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: gaofu@chinacdc.cn.
William J LiuNHC Key Laboratory of Medical Virology and Viral Diseases, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 100052, China; School of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China. Electronic address: liujun@ivdc.chinacdc.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The viral peptides presentation by major histocompatibility complex class I (MHC I) molecules play a pivotal role in T-cell recognition and the subsequent virus clearance. This process is delicately adjusted by the variant residues of MHC I, especially the residues in the peptide binding groove (PBG). In a series of MHC I molecules, a salt bridge is formed above the N-terminus of the peptides. However, the potential impact of the salt bridge on peptide binding and T-cell receptor (TCR) recognition of MHC I, as well as the corresponding molecular basis, are still largely unknown. Herein, we determined the structures of HLA-B*4001 and H-2K

Indexed as

AnimalsAntigen PresentationBinding SitesFemaleGenes, MHC Class IHistocompatibility Antigens Class IHLA-B AntigensHumansMiceMice, Inbred BALB CPeptidesProtein BindingProtein ConformationReceptors, Antigen, T-CellT-LymphocytesHistocompatibility Antigens Class IHLA-B AntigensPeptidesReceptors, Antigen, T-CellCrystal structureMHC class ISalt bridgeT-cell epitopeTCR recognitionTetramer

Identifiers

PMID31226552
PMCPMC7112684

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.