Evidence map›Paper›PMID 31226226›Full record

ArticleInternational journal of cancer2020

A genome-wide association study of prostate cancer in Latinos.

Zhaohui Du, Hannah Hopp, Sue A Ingles, Chad Huff, Xin Sheng, Brandi Weaver, Mariana Stern, Thomas J Hoffmann, Esther M John, Stephen K Van Den Eeden and 6 more

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  3. Article
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Genomic ancestry and cancer among Latin Americans.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Race and prostate cancer: genomic landscape.Nature reviews. Urology · 2022
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Zhaohui DuDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.ORCID 0000-0002-7125-8928
Hannah HoppDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
Sue A InglesDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
Chad HuffThe University of Texas MD Anderson Cancer Center, Houston, TX.
Xin ShengDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
Brandi WeaverDepartment of Urology, University of Texas Health Science Center, San Antonio, TX.
Mariana SternDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
Thomas J HoffmannDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA.
Esther M JohnDepartment of Medicine and Stanford Cancer Institute, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0003-3259-8003
Stephen K Van Den EedenDivision of Research, Kaiser Permanente, Northern California, Oakland, CA.
Sara StromThe University of Texas MD Anderson Cancer Center, Houston, TX.
Robin J LeachDepartment of Urology, University of Texas Health Science Center, San Antonio, TX.
Ian M ThompsonDepartment of Urology, University of Texas Health Science Center, San Antonio, TX.
John S WitteDepartment of Epidemiology and Biostatistics, University of California, San Francisco, San Francisco, CA.
David V ContiDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
Christopher A HaimanDepartment of Preventative Medicine, Keck School of Medicine, University of Southern California, Norris Comprehensive Cancer Center, Los Angeles, CA.
University of Southern California · USThe University of Texas Health Science Center at San Antonio · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Francisco · USKaiser Permanente · USStanford Medicine · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Understanding Population Differences in Cancer: The MEC StudyU01CA164973 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI HAIMAN, CHRISTOPHER ALAN, LE MARCHAND, LOIC · 2015 to 2025
$37.4M
SAN ANTONIO CENTER OF BIOMARKERS OF RISK FOR PROSTATE CAU01CA086402 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEACH, ROBIN JEAN, THOMPSON, IAN M. · 2000 to 2018
$33.1M
RISK FACTORS FOR ADVANCED PROSTATE CANCERR01CA084979 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI INGLES, SUE ANN · 1999 to 2003
$2.2M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA84979NCI NIH HHS U01 CA086402NCI NIH HHS U01 CA164973
6 · The paper itself

Abstract

Latinos represent <1% of samples analyzed to date in genome-wide association studies of cancer. The clinical value of genetic information in guiding personalized medicine in populations of non-European ancestry will require additional discovery and risk locus characterization efforts across populations. In the present study, we performed a GWAS of prostate cancer (PrCa) in 2,820 Latino PrCa cases and 5,293 controls to search for novel PrCa risk loci and to examine the generalizability of known PrCa risk loci in Latino men. We also conducted a genetic admixture-mapping scan to identify PrCa risk alleles associated with local ancestry. Genome-wide significant associations were observed with 84 variants all located at the known PrCa risk regions at 8q24 (128.484-128.548) and 10q11.22 (MSMB gene). In admixture mapping, we observed genome-wide significant associations with local African ancestry at 8q24. Of the 162 established PrCa risk variants that are common in Latino men, 135 (83.3%) had effects that were directionally consistent as previously reported, among which 55 (34.0%) were statistically significant with p < 0.05. A polygenic risk model of the known PrCa risk variants showed that, compared to men with average risk (25th-75th percentile of the polygenic risk score distribution), men in the top 10% had a 3.19-fold (95% CI: 2.65, 3.84) increased PrCa risk. In conclusion, we found that the known PrCa risk variants can effectively stratify PrCa risk in Latino men. Larger studies in Latino populations will be required to discover and characterize genetic risk variants for PrCa and improve risk stratification for this population.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyHispanic or LatinoAgedAllelesBiomarkers, TumorGenotypeHumansMaleMiddle AgedMultifactorial InheritanceOdds RatioPolymorphism, Single NucleotideProstatic NeoplasmsBiomarkers, Tumoradmixture mappingGWASLatino menprostate cancer

Identifiers

PMID31226226
PMCPMC7028127
OpenAlexW2952838666

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.