Evidence map›Paper›PMID 31223620›Full record

ArticleBioMed research international2019

Validation of Reference Genes for Gene Expression Normalization in RAW264.7 Cells under Different Conditions.

Zhenzhen Bao, Yanli Huang, Jiyu Chen, Zhenglong Wang, Jiang Qian, Jiyang Xu, Yucheng Zhao

Abstract read
In one paragraph

Article in BioMed research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhenzhen BaoSchool of Pharmacy, Jiangsu Health Vocational College, Nanjing, Jiangsu, China.
Yanli HuangSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.
Jiyu ChenSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.
Zhenglong WangSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.
Jiang QianSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.
Jiyang XuSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.ORCID 0000-0002-6434-5054
Yucheng ZhaoSchool of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu, China.ORCID 0000-0002-8962-5212

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RAW264.7 is a macrophage strain derived from mice tumour and shows a significant ability in antigen uptake. Real-time quantitative PCR (RT-qPCR) is one of the most commonly used methods in gene studies and requires suitable reference genes to normalize and quantitate the expression of gene of interest with sensitivity and specificity. However, suitable reference genes in RAW264.7 cells have not yet been identified for accurate gene expression quantification. In the current study, we evaluated expression levels of ten candidate reference genes in RAW264.7 cells under different conditions. RT-qPCR results indicated significant differences in the expression levels among the ten reference genes. Statistical analyses were carried out using geNorm, NormFinder, and BestKeeper software to further investigate the stability of the reference genes. Integrating the results from the three analytical methods, cytochrome c-1 and hydroxymethylbilane synthase were found to be the most stable and therefore more suitable reference genes, while ribosomal protein L4 and cyclophilin A were the least stable. This study emphasises the importance of identifying and selecting the most stable reference genes for normalization and provides a basis for future gene expression studies using RAW264.7 cells.

Indexed as

AlgorithmsGene ExpressionAnimalsGene Expression ProfilingMiceRAW 264.7 CellsReal-Time Polymerase Chain ReactionReference StandardsSoftware

Identifiers

PMID31223620
PMCPMC6541955

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