Evidence map›Paper›PMID 31223274›Full record

ArticleInternational journal of biological sciences2019

Synthetic-Evolution Reveals Narrow Paths to Regulation of the

Alina Goldstein, Darya Goldman, Ervin Valk, Mart Loog, Liam J Holt, Larisa Gheber

Abstract read
In one paragraph

Article in International journal of biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alina GoldsteinDepartment of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, PO Box 653, Beer-Sheva, 84105, Israel.
Darya GoldmanDepartment of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, PO Box 653, Beer-Sheva, 84105, Israel.
Ervin ValkInstitute of Technology, University of Tartu, Estonia.
Mart LoogInstitute of Technology, University of Tartu, Estonia.
Liam J HoltInstitute for Systems Genetics, New York University Langone Health, NY, USA.
Larisa GheberDepartment of Chemistry and Ilse Katz Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, PO Box 653, Beer-Sheva, 84105, Israel.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cdk1 has been found to phosphorylate the majority of its substrates in disordered regions, but some substrates maintain precise phosphosite positions over billions of years. Here, we examined the phosphoregulation of the kinesin-5, Cin8, using synthetic Cdk1-sites. We first analyzed the three native Cdk1 sites within the catalytic motor domain. Any single site conferred regulation, but to different extents. Synthetic sites were then systematically generated by single amino-acid substitutions, starting from a phosphodeficient variant of Cin8. Out of 29 synthetic Cdk1 sites, 8 disrupted function; 19 were neutral, similar to the phospho-deficient variant; and only two gave rise to phosphorylation-dependent spindle phenotypes. Of these two, one was immediately adjacent to a native Cdk1 site. Only one novel site position resulted in phospho-regulation. This site was sampled elsewhere in evolution, but the synthetic version was inefficient in

Indexed as

Evolution, MolecularAmino Acid SequenceAmino Acid SubstitutionBinding SitesCDC2 Protein KinaseKinesinsModels, MolecularPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, ProteinSpindle ApparatusCDC2 Protein KinaseCIN8 protein, S cerevisiaeKinesinsSaccharomyces cerevisiae Proteinsanaphase BCdk1Cin8kinesin-5phosphoregulation

Identifiers

PMID31223274
PMCPMC6567808

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.