ArticleRice (New York, N.Y.)2019
Dissection of the Genetic Architecture of Rice Tillering using a Genome-wide Association Study.
Article in Rice (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
18 citing papers in PubMed.
- Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China.Rice (New York, N.Y.) · 2025Article
- Dissecting the Genetic Basis of Yield Traits and Validation of a Novel Quantitative Trait Locus for Grain Width and Weight in Rice.Plants (Basel, Switzerland) · 2024Article
- Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- QTL Mapping of Tiller Number in KoreanGenes · 2023Article
- Identification of two novel rice S genes through combination of association and transcription analyses with gene-editing technology.Plant biotechnology journal · 2023Article
- Identification of a Rice Leaf Width GeneInternational journal of molecular sciences · 2023Article
- Kin selection theory and the design of cooperative crops.Evolutionary applications · 2022Article
- Foliar Application ofPlants (Basel, Switzerland) · 2022Article
- Assessment of Rice Sheath Blight Resistance Including Associations with Plant Architecture, as Revealed by Genome-Wide Association Studies.Rice (New York, N.Y.) · 2022Article
- Identification of One Major QTL and a Novel GenePlants (Basel, Switzerland) · 2022Article
- Mapping novel QTLs for yield related traits from a popular rice hybrid KRH-2 derived doubled haploid (DH) population.3 Biotech · 2021Article
- Association Mapping and Functional Analysis of Rice Cold Tolerance QTLs at the Bud Burst Stage.Rice (New York, N.Y.) · 2021Article
- Genome-Wide Association Study of the Genetic Basis of Effective Tiller Number in Rice.Rice (New York, N.Y.) · 2021Article
- Genome-Wide Association Study Reveals the QTLs for Seed Storability in World Rice Core Collections.Plants (Basel, Switzerland) · 2021Article
- Genome-wide association study and Mendelian randomization analysis provide insights for improving rice yield potential.Scientific reports · 2021Article
- Genetic Basis of Tiller Dynamics of Rice Revealed by Genome-Wide Association Studies.Plants (Basel, Switzerland) · 2020Article
- The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2020Article
- Genome-Wide Association Study of Rice Rooting Ability at the Seedling Stage.Rice (New York, N.Y.) · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
backgroundRice tiller number (TN) is one of the most important components associated with rice grain yield. Around one hundred rice TN genes have been identified, but dissecting the genetic architecture of rice TN variations remains difficult because of its complex trait and control by both major genes and quantitative trait loci (QTLs).
resultsIn this study, we used a subset of the rice diversity population II (S-RDP-II), genotyped with 700,000 single nucleotide polymorphisms (SNPs), to identify the loci associated with tiller number variations (LATNs) through a genome-wide association study (GWAS). The analysis revealed that 23 LATNs are significantly associated with TN variations. Among the 23 LATNs, eight are co-localized with previously cloned TN genes, and the remaining 15 LATNs are novel. DNA sequence analysis of the 15 novel LATNs led to the identification of five candidate genes using the accessions with extreme TN phenotypes. Genetic variations in two of the genes are mainly located in the promoter regions. qRT-PCR analysis showed that the expression levels of these two genes are also closely associated with TN variations.
conclusionsWe identified 15 novel LATNs that contribute significantly to the genetic variation of rice TN. Of these 15, the five identified TN-associated candidate genes will enhance our understanding of rice tillering and can be used as molecular markers for improving rice yield.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.