Evidence map›Paper›PMID 31222458›Full record

ArticleMolecular biology reports2019

Transcriptomic changes in sweetpotato peroxidases in response to infection with the root-knot nematode Meloidogyne incognita.

Yeon Woo Sung, Il Hwan Lee, Donghwan Shim, Kang-Lok Lee, Ki Jung Nam, Jung-Wook Yang, Jeung Joo Lee, Sang-Soo Kwak, Yun-Hee Kim

Abstract read
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Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in plant science · 2022
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yeon Woo SungDepartment of Biology Education, IALS, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Il Hwan LeeDepartment of Forest Bio-resources, National Institute of Forest Science, Suwon, Republic of Korea.
Donghwan ShimDepartment of Forest Bio-resources, National Institute of Forest Science, Suwon, Republic of Korea.
Kang-Lok LeeDepartment of Biology Education, IALS, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Ki Jung NamDepartment of Biology Education, IALS, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Jung-Wook YangNational Institute of Crop Science, Rural Development Administration, Suwon, Republic of Korea.
Jeung Joo LeeDepartment of Plant Medicine, IALS, Gyeongsang National University, Jinju, Republic of Korea.
Sang-Soo KwakPlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea.
Yun-Hee KimDepartment of Biology Education, IALS, Gyeongsang National University, Jinju, 660-701, Republic of Korea. cefle@gnu.ac.kr.
Gyeongsang National University · KRKorea Forest Service · KRKorea Research Institute of Bioscience and Biotechnology · KRRural Development Administration · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A previous transcriptomic analysis of the roots of susceptible and resistant cultivars of sweetpotato (Ipomoea batatas) identified genes that were likely to contribute to protection against infection with the root-knot nematode Meloidogyne incognita. The current study examined the roles of peroxidase genes in sweetpotato defense responses during root-knot nematode infection, using the susceptible (cv. Yulmi) and resistant (cv. Juhwangmi) cultivars. Differentially expressed genes were assigned to gene ontology categories to predict their functional roles and associated biological processes. Comparison with Arabidopsis peroxidases identified a group of genes orthologous to Arabidopsis PEROXIDASE 52 (AtPrx52). An analysis of sweetpotato peroxidase genes determined their roles in protecting plants against root-knot nematode infection and enabled identification of important peroxidases. The interactions involved in sweetpotato resistance to nematode infection are discussed.

Indexed as

AnimalsDisease ResistanceExome SequencingGene Expression ProfilingInfectionsIpomoea batatasPeroxidasesPlant DiseasesPlant ProteinsPlant RootsSequence Analysis, RNATranscriptomeTylenchoideaPeroxidasesPlant ProteinsDefense signalingPeroxidaseRoot-knot nematodesSweetpotatoTranscriptome

Identifiers

PMID31222458
OpenAlexW2949500087

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.