Evidence map›Paper›PMID 31222142›Full record

ArticleScientific reports2019

The chromatin remodeler Chd1 regulates cohesin in budding yeast and humans.

Alexandra Boginya, Rajesh Detroja, Avi Matityahu, Milana Frenkel-Morgenstern, Itay Onn

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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  14. FACT mediates cohesin function on chromatin.Nature structural & molecular biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexandra BoginyaChromosome Instability and Dynamics Lab. The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Rajesh DetrojaCancer Genomics and Biocomputing of Complex Diseases Lab. The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Avi MatityahuChromosome Instability and Dynamics Lab. The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.
Milana Frenkel-MorgensternCancer Genomics and Biocomputing of Complex Diseases Lab. The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel.ORCID http://orcid.org/0000-0002-0329-4599
Itay OnnChromosome Instability and Dynamics Lab. The Azrieli Faculty of Medicine, Bar-Ilan University, Safed, Israel. Itay.Onn@biu.ac.il.ORCID http://orcid.org/0000-0002-7689-5520
Bar-Ilan University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chd1 is a chromatin remodeler that is involved in nucleosome positioning and transcription. Deletion of CHD1 is a frequent event in prostate cancer. The Structural Maintenance of Chromosome (SMC) complex cohesin mediates long-range chromatin interactions and is involved in maintaining genome stability. We provide new evidence that Chd1 is a regulator of cohesin. In the yeast S. cerevisiae, Chd1 is not essential for viability. We show that deletion of the gene leads to a defect in sister chromatid cohesion and in chromosome morphology. Chl1 is a non-essential DNA helicase that has been shown to regulate cohesin loading. Surprisingly, co-deletion of CHD1 and CHL1 results in an additive cohesion defect but partial suppression of the chromosome structure phenotype. We found that the cohesin regulator Pds5 is overexpressed when Chd1 and Chl1 are deleted. However, Pds5 expression is reduced to wild type levels when both genes are deleted. Finally, we show a correlation in the expression of CHD1 and cohesin genes in prostate cancer patients. Furthermore, we show that overexpression of cohesin subunits is correlated with the aggressiveness of the tumor. The biological roles of the interplay between Chd1, Chl1 and SMCs are discussed.

Indexed as

Cell Cycle ProteinsChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneCohesinsDNA-Binding ProteinsDNA HelicasesHumansSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSister Chromatid ExchangeTranscription FactorsCell Cycle ProteinsCHD1 protein, humanCHD1 protein, S cerevisiaeChromosomal Proteins, Non-HistoneCohesinsDNA-Binding ProteinsDNA HelicasesPDS5B protein, humanSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID31222142
PMCPMC6586844
OpenAlexW2953317800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.