Evidence map›Paper›PMID 31222095›Full record

ArticleScientific reports2019

Machine-assisted cultivation and analysis of biofilms.

Silla H Hansen, Tobias Kabbeck, Carsten P Radtke, Susanne Krause, Eva Krolitzki, Theo Peschke, Jannis Gasmi, Kersten S Rabe, Michael Wagner, Harald Horn and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. How to study biofilms: technological advancements in clinical biofilm research.Frontiers in cellular and infection microbiology · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. The Open Challenge ofFrontiers in bioengineering and biotechnology · 2020
    Review
  12. Chromate Resistance Mechanisms in Leucobacter chromiiresistens.Applied and environmental microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Silla H HansenKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.
Tobias KabbeckKarlsruhe Institute of Technology (KIT), Institute for Applied Biosciences (IAB), Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.
Carsten P RadtkeKarlsruhe Institute of Technology (KIT), Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.ORCID http://orcid.org/0000-0002-9700-9962
Susanne KrauseKarlsruhe Institute of Technology (KIT), Institute for Applied Biosciences (IAB), Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.
Eva KrolitzkiKarlsruhe Institute of Technology (KIT), Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.
Theo PeschkeKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.
Jannis GasmiKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.
Kersten S RabeKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.ORCID http://orcid.org/0000-0001-7909-8191
Michael WagnerKarlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131, Karlsruhe, Germany.
Harald HornKarlsruhe Institute of Technology (KIT), Engler-Bunte-Institut, Water Chemistry and Water Technology, Engler-Bunte-Ring 9a, 76131, Karlsruhe, Germany.
Jürgen HubbuchKarlsruhe Institute of Technology (KIT), Institute of Engineering in Life Sciences, Section IV: Biomolecular Separation Engineering, Fritz-Haber-Weg 2, 76131, Karlsruhe, Germany.
Johannes GescherKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany. johannes.gescher@kit.edu.
Christof M NiemeyerKarlsruhe Institute of Technology (KIT), Institute for Biological Interfaces (IBG-1), Herrmann-von-Helmholtz Platz 1, 76344, Eggenstein-Leopoldshafen, Germany. niemeyer@kit.edu.ORCID http://orcid.org/0000-0002-8837-081X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biofilms are the natural form of life of the majority of microorganisms. These multispecies consortia are intensively studied not only for their effects on health and environment but also because they have an enormous potential as tools for biotechnological processes. Further exploration and exploitation of these complex systems will benefit from technical solutions that enable integrated, machine-assisted cultivation and analysis. We here introduce a microfluidic platform, where readily available microfluidic chips are connected by automated liquid handling with analysis instrumentation, such as fluorescence detection, microscopy, chromatography and optical coherence tomography. The system is operable under oxic and anoxic conditions, allowing for different gases and nutrients as feeding sources and it offers high spatiotemporal resolution in the analysis of metabolites and biofilm composition. We demonstrate the platform's performance by monitoring the productivity of biofilms as well as the spatial organization of two bacterial species in a co-culture, which is driven by chemical gradients along the microfluidic channel.

Indexed as

BiofilmsLab-On-A-Chip DevicesBacillus subtilisChromatographyEscherichia coliIn Situ Hybridization, FluorescenceMicroscopySpectrometry, FluorescenceTomography, Optical Coherence

Identifiers

PMID31222095
PMCPMC6586868

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.