Evidence map›Paper›PMID 31221982›Full record

ArticleScientific reports2019

Complex molecular mechanisms underlying MYMIV-resistance in Vigna mungo revealed by comparative transcriptome profiling.

Anirban Kundu, Pankaj Kumar Singh, Avishek Dey, Sayak Ganguli, Amita Pal

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Variable infection mechanisms of mungbean yellow mosaic India virus in diversePhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
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  7. De Novo Transcriptome Assembly of Rice Bean (Plants (Basel, Switzerland) · 2024
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  8. Article
  9. Article
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  11. Review
  12. Article
  13. Article
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  15. Article
  16. Differential responses ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anirban KunduDivision of Plant Biology, Bose Institute, Kolkata, 700054, India.
Pankaj Kumar SinghDivision of Plant Biology, Bose Institute, Kolkata, 700054, India.
Avishek DeyDivision of Plant Biology, Bose Institute, Kolkata, 700054, India.
Sayak GanguliTheoretical and Computational Biology, AIIST, Palta, Kolkata, India.
Amita PalDivision of Plant Biology, Bose Institute, Kolkata, 700054, India. amita@jcbose.ac.in.
Bose Institute · INRamakrishna Mission Vivekananda Educational and Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mungbean Yellow Mosaic India Virus (MYMIV)-infection creates major hindrance in V. mungo cultivation and poses significant threat to other grain legume production. Symptoms associated include severe patho-physiological alterations characterized by chlorotic foliar lesion accompanied by reduced growth. However, dissection of the host's defense machinery remains a tough challenge due to limited of host's genomic resources. A comparative RNA-Seq transcriptomes of resistant (VM84) and susceptible (T9) plants was carried out to identify genes potentially involved in V. mungo resistance against MYMIV. Distinct gene expression landscapes were observed in VM84 and T9 with 2158 and 1679 differentially expressed genes (DEGs), respectively. Transcriptomic responses in VM84 reflect a prompt and intense immune reaction demonstrating an efficient pathogen surveillance leading to activation of basal and induced immune responses. Functional analysis of the altered DEGs identified multiple regulatory pathways to be activated or repressed over time. Up-regulation of DEGs including NB-LRR, WRKY33, ankyrin, argonaute and NAC transcription factor revealed an insight on their potential roles in MYMIV-resistance; and qPCR validation shows a propensity of their accumulation in VM84. Analyses of the current RNA-Seq dataset contribute immensely to decipher molecular responses that underlie MYMIV-resistance and will aid in the improvement strategy of V. mungo and other legumes through comparative functional genomics.

Indexed as

TranscriptomeBegomovirusGene Expression ProfilingGenetic Predisposition to DiseaseHost Microbial InteractionsPlant DiseasesPlant ProteinsVignaPlant Proteins

Identifiers

PMID31221982
PMCPMC6586629
OpenAlexW2952350149

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.