Evidence map›Paper›PMID 31221966›Full record

ArticleNature communications2019

Non-equilibrium dynamics of a nascent polypeptide during translation suppress its misfolding.

Lisa M Alexander, Daniel H Goldman, Liang M Wee, Carlos Bustamante

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Structures of protein folding intermediates on the ribosome.Nature structural & molecular biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Translation Rates and Protein Folding.Journal of molecular biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Co-Translational Folding of Multi-Domain Proteins.Frontiers in molecular biosciences · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lisa M AlexanderDepartment of Chemistry, University of California Berkeley, Berkeley, CA, 94720, USA.
Daniel H GoldmanDepartment of Chemistry, University of California Berkeley, Berkeley, CA, 94720, USA.
Liang M WeeCalifornia Institute for Quantitative Biosciences, University of California Berkeley, Berkeley, CA, 94720, USA.
Carlos BustamanteDepartment of Chemistry, University of California Berkeley, Berkeley, CA, 94720, USA. carlosb@berkeley.edu.

Funding

THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
Mechanisms of Viral DNA PackagingR01GM071552 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 2004 to 2015
$4.7M
NIGMS NIH HHS R01 GM032543NIGMS NIH HHS R01 GM071552U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM032543U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM071552
6 · The paper itself

Abstract

Protein folding can begin co-translationally. Due to the difference in timescale between folding and synthesis, co-translational folding is thought to occur at equilibrium for fast-folding domains. In this scenario, the folding kinetics of stalled ribosome-bound nascent chains should match the folding of nascent chains in real time. To test if this assumption is true, we compare the folding of a ribosome-bound, multi-domain calcium-binding protein stalled at different points in translation with the nascent chain as is it being synthesized in real-time, via optical tweezers. On stalled ribosomes, a misfolded state forms rapidly (1.5 s). However, during translation, this state is only attained after a long delay (63 s), indicating that, unexpectedly, the growing polypeptide is not equilibrated with its ensemble of accessible conformations. Slow equilibration on the ribosome can delay premature folding until adequate sequence is available and/or allow time for chaperone binding, thus promoting productive folding.

Indexed as

Models, MolecularProtein FoldingBacterial ProteinsCalcium-Binding ProteinsMolecular ChaperonesOptical TweezersPeptidesProtein BiosynthesisProtein DomainsRibosomesTime FactorsBacterial ProteinsCalcium-Binding Proteinscalerythrin protein, Saccharopolyspora erythraeaMolecular ChaperonesPeptides

Identifiers

PMID31221966
PMCPMC6586675

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.