Evidence map›Paper›PMID 31221752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Rapid assembly and profiling of an anticoagulant sulfoprotein library.

Emma E Watson, Jorge Ripoll-Rozada, Ashley C Lee, Mike C L Wu, Charlotte Franck, Tim Pasch, Bhavesh Premdjee, Jessica Sayers, Maria F Pinto, Pedro M Martins and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Emma E WatsonSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0001-5946-473X
Jorge Ripoll-RozadaInstituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.ORCID 0000-0001-7235-317X
Ashley C LeeCentral Clinical School, Heart Research Institute, Newtown, NSW 2042, Australia.ORCID 0000-0002-7302-7330
Mike C L WuCentral Clinical School, Heart Research Institute, Newtown, NSW 2042, Australia.ORCID 0000-0002-4039-4409
Charlotte FranckSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0002-0078-7953
Tim PaschSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0002-8528-983X
Bhavesh PremdjeeSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0001-6967-9857
Jessica SayersSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia.ORCID 0000-0001-5780-4155
Maria F PintoInstituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.ORCID 0000-0002-6337-3459
Pedro M MartinsInstituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.ORCID 0000-0002-6908-1828
Shaun P JacksonCentral Clinical School, Heart Research Institute, Newtown, NSW 2042, Australia.ORCID 0000-0002-4750-1991
Pedro José Barbosa PereiraInstituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.ORCID 0000-0003-0969-5438
Richard J PayneSchool of Chemistry, The University of Sydney, Sydney, NSW 2006, Australia; richard.payne@sydney.edu.au.ORCID 0000-0002-3618-9226

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hematophagous organisms produce a suite of salivary proteins which interact with the host's coagulation machinery to facilitate the acquisition and digestion of a bloodmeal. Many of these biomolecules inhibit the central blood-clotting serine proteinase thrombin that is also the target of several clinically approved anticoagulants. Here a bioinformatics approach is used to identify seven tick proteins with putative thrombin inhibitory activity that we predict to be posttranslationally sulfated at two conserved tyrosine residues. To corroborate the biological role of these molecules and investigate the effects of amino acid sequence and sulfation modifications on thrombin inhibition and anticoagulant activity, a library of 34 homogeneously sulfated protein variants were rapidly assembled using one-pot diselenide-selenoester ligation (DSL)-deselenization chemistry. Downstream functional characterization validated the thrombin-directed activity of all target molecules and revealed that posttranslational sulfation of specific tyrosine residues crucially modulates potency. Importantly, access to this homogeneously modified protein library not only enabled the determination of key structure-activity relationships and the identification of potent anticoagulant leads, but also revealed subtleties in the mechanism of thrombin inhibition, between and within the families, that would be impossible to predict from the amino acid sequence alone. The synthetic platform described here therefore serves as a highly valuable tool for the generation and thorough characterization of libraries of related peptide and/or protein molecules (with or without modifications) for the identification of lead candidates for medicinal chemistry programs.

Indexed as

Amino Acid SequenceAnticoagulantsBlood CoagulationComputational BiologyGene LibraryHumansInsect ProteinsProtein Processing, Post-TranslationalSalivary Proteins and PeptidesStructure-Activity RelationshipThrombinTyrosineAnticoagulantsInsect ProteinsSalivary Proteins and PeptidesThrombinTyrosineblood clottingligationproteinsynthesisthrombin

Identifiers

PMID31221752
PMCPMC6628821

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.