Evidence map›Paper›PMID 31221726›Full record

ArticleRNA (New York, N.Y.)2019

MRB10130 is a RESC assembly factor that promotes kinetoplastid RNA editing initiation and progression.

Natalie M McAdams, Gregory L Harrison, Brianna L Tylec, Michelle L Ammerman, Runpu Chen, Yijun Sun, Laurie K Read

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Translational control byRNA (New York, N.Y.) · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. KRGG1 function in RNA editing inRNA (New York, N.Y.) · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Natalie M McAdamsDepartment of Microbiology and Immunology, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, New York 14203, USA.
Gregory L HarrisonDepartment of Microbiology and Immunology, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, New York 14203, USA.
Brianna L TylecDepartment of Microbiology and Immunology, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, New York 14203, USA.
Michelle L AmmermanDepartment of Chemistry and Biochemistry, Kettering University, Flint, Michigan 48504, USA.
Runpu ChenDepartment of Computer Science and Engineering, University at Buffalo, Buffalo, New York 14260, USA.
Yijun SunDepartment of Microbiology and Immunology, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, New York 14203, USA.
Laurie K ReadDepartment of Microbiology and Immunology, University at Buffalo Jacobs School of Medicine and Biomedical Sciences, Buffalo, New York 14203, USA.ORCID 0000-0003-1235-6736

Funding

Oral Microbiome and Periodontitis: A Prospective Study in Postmenopausal WomenR01DE024523 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI WACTAWSKI-WENDE, JEAN · 2014 to 2018
$3.8M
Regulation of RNA editing in Trypansoma bruceiR01AI061580 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2006 to 2015
$3.0M
Kinetoplastid RNA editingR01GM129041 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2018 to 2021
$1.6M
Developing Advanced Algorithms to Address Major Computational Challenges in Current Microbiome ResearchR01AI125982 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SUN, YIJUN · 2016 to 2018
$973k
NIAID NIH HHS R01 AI061580NIAID NIH HHS R01 AI125982NIDCR NIH HHS R01 DE024523NIGMS NIH HHS R01 GM129041
6 · The paper itself

Abstract

Uridine insertion deletion editing in kinetoplastid protozoa requires a complex machinery, a primary component of which is the RNA editing substrate binding complex (RESC). RESC contains two modules termed GRBC (guide RNA binding complex) and REMC (RNA editing mediator complex), although how interactions between these modules and their mRNA and gRNA binding partners are controlled is not well understood. Here, we demonstrate that the ARM/HEAT repeat containing RESC protein, MRB10130, controls REMC association with mRNA- and gRNA-loaded GRBC. High-throughput sequencing analyses show that MRB10130 functions in both initiation and 3' to 5' progression of editing through gRNA-defined domains. Editing intermediates that accumulate upon MRB10130 depletion significantly intersect those in cells depleted of another RESC organizer, MRB7260, but are distinct from those in cells depleted of specific REMC proteins. We present a model in which MRB10130 coordinates numerous protein-protein and protein-RNA interactions during editing progression.

Indexed as

AnimalsCell LineProtein Interaction Domains and MotifsProtozoan ProteinsRNA EditingRNA, Guide, KinetoplastidaRNA InterferenceRNA, MessengerRNA, ProtozoanTrypanosoma brucei bruceiUridineProtozoan ProteinsRNA, Guide, KinetoplastidaRNA, MessengerRNA, ProtozoanUridineguide RNAkinetoplastidmitochondriaTrypanosoma bruceiuridine insertion/deletion RNA editing

Identifiers

PMID31221726
PMCPMC6800514

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.