Evidence map›Paper›PMID 31221721›Full record

ArticleMolecular & cellular proteomics : MCP2019

Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer.

Zeynep Cansu Uretmen Kagiali, Erdem Sanal, Özge Karayel, Ayse Nur Polat, Özge Saatci, Pelin Gülizar Ersan, Kathrin Trappe, Bernhard Y Renard, Tamer T Önder, Nurcan Tuncbag and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Zeynep Cansu Uretmen Kagiali‡Department of Molecular Biology and Genetics, Koç University, 34450 Istanbul, Turkey.
Erdem Sanal‡Department of Molecular Biology and Genetics, Koç University, 34450 Istanbul, Turkey.
Özge Karayel‡Department of Molecular Biology and Genetics, Koç University, 34450 Istanbul, Turkey.
Ayse Nur Polat‡Department of Molecular Biology and Genetics, Koç University, 34450 Istanbul, Turkey.
Özge Saatci§Department of Drug Discovery and Biomedical Sciences, University of South Carolina, Columbia, SC 29208.
Pelin Gülizar Ersan¶Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey.
Kathrin Trappe‖Bioinformatics Unit (MF1), Robert Koch Institute, 13353 Berlin, Germany.
Bernhard Y Renard‖Bioinformatics Unit (MF1), Robert Koch Institute, 13353 Berlin, Germany.
Tamer T Önder**Koç University Research Center for Translational Medicine (KUTTAM), 34450 Istanbul, Turkey; ‡‡School of Medicine, Koç University, 34450 Istanbul, Turkey.
Nurcan Tuncbag§§Graduate School of Informatics, Department of Health Informatics, METU, 06800 Ankara, Turkey; ¶¶Cancer Systems Biology Laboratory (CanSyL), METU, 06800 Ankara, Turkey.
Özgür Şahin§Department of Drug Discovery and Biomedical Sciences, University of South Carolina, Columbia, SC 29208; ¶Department of Molecular Biology and Genetics, Faculty of Science, Bilkent University, 06800 Ankara, Turkey.
Nurhan Ozlu‡Department of Molecular Biology and Genetics, Koç University, 34450 Istanbul, Turkey; **Koç University Research Center for Translational Medicine (KUTTAM), 34450 Istanbul, Turkey. Electronic address: nozlu@ku.edu.tr.
Koç University · TRRobert Koch Institute · DEUniversity of South Carolina · USAnkara University · TRBilkent University · TR

Funding

Targeting NMDA Receptors and Brain Estradiol to Rescue Memory in Aging FemalesP20GM109091 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI RONINSON, IGOR B · 2014 to 2024
$25.2M
NIGMS NIH HHS P20 GM109091
6 · The paper itself

Abstract

Epithelial-mesenchymal transition (EMT) is driven by complex signaling events that induce dramatic biochemical and morphological changes whereby epithelial cells are converted into cancer cells. However, the underlying molecular mechanisms remain elusive. Here, we used mass spectrometry based quantitative proteomics approach to systematically analyze the post-translational biochemical changes that drive differentiation of human mammary epithelial (HMLE) cells into mesenchymal. We identified 314 proteins out of more than 6,000 unique proteins and 871 phosphopeptides out of more than 7,000 unique phosphopeptides as differentially regulated. We found that phosphoproteome is more unstable and prone to changes during EMT compared with the proteome and multiple alterations at proteome level are not thoroughly represented by transcriptional data highlighting the necessity of proteome level analysis. We discovered cell state specific signaling pathways, such as Hippo, sphingolipid signaling, and unfolded protein response (UPR) by modeling the networks of regulated proteins and potential kinase-substrate groups. We identified two novel factors for EMT whose expression increased on EMT induction: DnaJ heat shock protein family (Hsp40) member B4 (DNAJB4) and cluster of differentiation 81 (CD81). Suppression of DNAJB4 or CD81 in mesenchymal breast cancer cells resulted in decreased cell migration

Indexed as

AnimalsBreast NeoplasmsCell Line, TumorCell MovementEpithelial-Mesenchymal TransitionFemaleHSP40 Heat-Shock ProteinsHumansKaplan-Meier EstimateMammary Neoplasms, ExperimentalMice, NudePhosphoproteinsReproducibility of ResultsTetraspanin 28CD81 protein, humanDNAJB4 protein, humanHSP40 Heat-Shock ProteinsPhosphoproteinsTetraspanin 28Breast cancerCancer biomarker(s)CD81DNAJB4EMTKinasesMetastasisMouse modelsNetworks'omic' data integrationPhosphoproteomeQuantificationTwist

Identifiers

PMID31221721
PMCPMC6731077
OpenAlexW2949237073

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.