Evidence map›Paper›PMID 31219078›Full record

ReviewThe Indian journal of medical research2019

Mismatch amplification mutation assay-polymerase chain reaction: A method of detecting fluoroquinolone resistance mechanism in bacterial pathogens.

Vijaya Kumar Deekshit, Kadeeja Jazeela, Gunimala Chakraborty, Anusha Rohit, Anirban Chakraborty, Indrani Karunasagar

Open access · diamondAbstract readReview
In one paragraph

Review in The Indian journal of medical research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Development of a mismatch amplification mutation assay to correctly serotype isolates ofJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Vijaya Kumar DeekshitDivision of Infectious Diseases, Nitte University Centre for Science Education & Research, Mangaluru, India.
Kadeeja JazeelaDivision of Infectious Diseases, Nitte University Centre for Science Education & Research, Mangaluru, India.
Gunimala ChakrabortyDivision of Infectious Diseases, Nitte University Centre for Science Education & Research, Mangaluru, India.
Anusha RohitDepartment of Microbiology, Madras Medical Mission, Chennai, India.
Anirban ChakrabortyDivision of Infectious Diseases, Nitte University Centre for Science Education & Research, Mangaluru, India.
Indrani KarunasagarNitte University Centre for Science Education & Research, Mangaluru, India.
Nitte University · INMadras Medical Mission · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mismatch amplification assay is a modified version of polymerase chain reaction (PCR) that permits specific amplification of gene sequences with single base pair change. The basis of the technique relies on primer designing. The single nucleotide mismatch at the 3' proximity of the reverse oligonucleotide primer makes Taq DNA polymerase unable to carry out extension process. Thus, the primers produce a PCR fragment in the wild type, whereas it is not possible to yield a product with a mutation at the site covered by the mismatch positions on the mismatch amplification mutation assay (MAMA) primer from any gene. The technique offers several advantages over other molecular methods, such as PCR-restriction fragment length polymorphism (RFLP) and oligonucleotide hybridization, which is routinely used in the detection of known point mutations. Since multiple point mutations in the quinolone resistance determining region play a major role in high-level fluoroquinolone resistance in Gram-negative bacteria, the MAMA-PCR technique is preferred for detecting these mutations over PCR-RFLP and sequencing technology.

Indexed as

Base SequenceDNA Mismatch RepairDrug Resistance, BacterialFluoroquinolonesGram-Negative BacteriaHumansNucleic Acid HybridizationOligonucleotidesPoint MutationPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthFluoroquinolonesOligonucleotidesFluoroquinolone resistancemismatch amplification mutation assaypolymerase chain reactionquinolone resistance determining region mutations

Identifiers

PMID31219078
PMCPMC6563742
OpenAlexW2948437774

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.