Evidence map›Paper›PMID 31217532›Full record

ArticleScientific reports2019

Screening by changes in stereotypical behavior during cell motility.

Luke Tweedy, Patrick Witzel, Doris Heinrich, Robert H Insall, Robert G Endres

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Quantitative cell imaging approaches to metastatic state profiling.Frontiers in cell and developmental biology · 2022
    Review
  3. Article
  4. Review
  5. Artificial Intelligence in Intracoronary Imaging.Current cardiology reports · 2020
    Review
  6. The Maximum Caliber Variational Principle for Nonequilibria.Annual review of physical chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Luke TweedyDepartment of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College, London, United Kingdom.
Patrick WitzelFraunhofer Institute for Silicate Research ISC, Neunerplatz 2, 97082, Würzburg, Germany.
Doris HeinrichFraunhofer Institute for Silicate Research ISC, Neunerplatz 2, 97082, Würzburg, Germany.
Robert H InsallCRUK Beatson Institute, Glasgow, G61 1BD, Scotland, UK.ORCID http://orcid.org/0000-0003-4898-040X
Robert G EndresDepartment of Life Sciences and Centre for Integrative Systems Biology and Bioinformatics, Imperial College, London, United Kingdom. r.endres@imperial.ac.uk.ORCID http://orcid.org/0000-0003-1379-659X
Cancer Research UK Scotland Institute · GBFraunhofer Institute for Silicate Research · DEImperial College London · GBLeiden University · NL

Funding

Biotechnology and Biological Sciences Research Council BB/N00065X/1Cancer Research UK 20017
6 · The paper itself

Abstract

Stereotyped behaviors are series of postures that show very little variability between repeats. They have been used to classify the dynamics of individuals, groups and species without reference to the lower-level mechanisms that drive them. Stereotypes are easily identified in animals due to strong constraints on the number, shape, and relative positions of anatomical features, such as limbs, that may be used as landmarks for posture identification. In contrast, the identification of stereotypes in single cells poses a significant challenge as the cell lacks these landmark features, and finding constraints on cell shape is a non-trivial task. Here, we use the maximum caliber variational method to build a minimal model of cell behavior during migration. Without reference to biochemical details, we are able to make behavioral predictions over timescales of minutes using only changes in cell shape over timescales of seconds. We use drug treatment and genetics to demonstrate that maximum caliber descriptors can discriminate between healthy and aberrant migration, thereby showing potential applications for maximum caliber methods in automated disease screening, for example in the identification of behaviors associated with cancer metastasis.

Indexed as

Cell MovementMass ScreeningComputer SimulationDictyosteliumFourier AnalysisGenotypePrincipal Component AnalysisStereotyped Behavior

Identifiers

PMID31217532
PMCPMC6584642
OpenAlexW2950686592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.