Evidence map›Paper›PMID 31217256›Full record

ArticleRNA (New York, N.Y.)2019

Rrp5 establishes a checkpoint for 60S assembly during 40S maturation.

Sohail Khoshnevis, Xin Liu, Maria D Dattolo, Katrin Karbstein

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sohail KhoshnevisDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Xin LiuDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Maria D DattoloDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.
Katrin KarbsteinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, Florida 33458, USA.ORCID 0000-0002-4034-1331
Scripps Research Institute · US

Funding

Quality Control in Ribosome Assembly - the Function of Regulatory ProteinsR01GM086451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KARBSTEIN, KATRIN · 2009 to 2019
$4.8M
Kinase-mediated assembly of the mRNA entry channel in 40S ribosomesR01GM117093 · NIGMS · SCRIPPS FLORIDA · PI KARBSTEIN, KATRIN · 2016 to 2019
$1.7M
Howard Hughes Medical Institute 55108536NIGMS NIH HHS R01 GM086451NIGMS NIH HHS R01 GM117093
6 · The paper itself

Abstract

Even though the RNAs contained in the small (40S) and large (60S) ribosomal subunits are cotranscribed, their assembly proceeds largely separately, involving entirely distinct machineries. Nevertheless, separation of the two subunits, an event that is critical for assembly of the small subunit, is delayed until domain I of the large subunit is transcribed, indicating crosstalk between the two assembly pathways. Here we show that this crosstalk is mediated by the assembly factor Rrp5, one of only three proteins required for assembly of both ribosomal subunits. Quantitative RNA binding and cleavage data demonstrate that early on, Rrp5 blocks separation of the two subunits, and thus 40S maturation by inhibiting the access of Rcl1 to promote cleavage of the nascent rRNA. Upon transcription of domain I of 25S rRNA, the 60S assembly factors Noc1/Noc2 bind both this RNA and Rrp5 to change the Rrp5 RNA binding mode to enable pre-40S rRNA processing. Mutants in the HEAT-repeat domain of Noc1 are deficient in the separation of the subunits, which is rescued by overexpression of wild-type but not inactive Rcl1 in vivo. Thus, Rrp5 establishes a checkpoint for 60S assembly during 40S maturation to ensure balanced levels of the two subunits.

Indexed as

Binding SitesDNA, Ribosomal SpacerNuclear ProteinsRibosomal ProteinsRibosome Subunits, Large, EukaryoticRibosome Subunits, Small, EukaryoticRNA-Binding ProteinsRNA, FungalRNA PrecursorsRNA Processing, Post-TranscriptionalRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA, Ribosomal SpacerNuclear ProteinsRibosomal ProteinsRNA-Binding ProteinsRNA, FungalRNA PrecursorsRNA, RibosomalRNA, ribosomal, 25SRRP5 protein, S cerevisiaeSaccharomyces cerevisiae Proteinscheckpointregulationribosome assembly

Identifiers

PMID31217256
PMCPMC6800521
OpenAlexW2952688319

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.