Evidence map›Paper›PMID 31216621›Full record

ArticleInternational journal of molecular sciences2019

Genome-Wide Analysis of the MADS-Box Transcription Factor Family in

Yunshu Wang, Jianling Zhang, Zongli Hu, Xuhu Guo, Shibing Tian, Guoping Chen

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
11.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 145 citations in OpenAlex.

  1. Functional analysis ofPlant signaling & behavior · 2026
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  14. Genome-Wide Investigation ofInternational journal of molecular sciences · 2025
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  18. Identification ofInternational journal of molecular sciences · 2024
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yunshu WangLaboratory of molecular biology of tomato, Bioengineering College, Chongqing University, Chongqing 400044, China. wangyunshu@cqu.edu.cn.
Jianling ZhangLaboratory of molecular biology of tomato, Bioengineering College, Chongqing University, Chongqing 400044, China. zhangjianling0520@126.com.
Zongli HuLaboratory of molecular biology of tomato, Bioengineering College, Chongqing University, Chongqing 400044, China. huzongli71@163.com.
Xuhu GuoLaboratory of molecular biology of tomato, Bioengineering College, Chongqing University, Chongqing 400044, China. 20131901005@cqu.edu.cn.
Shibing TianThe Institute of Vegetable Research, Chongqing Academy of Agricultural Sciences, Chongqing 401329, China. tiansbing@aliyun.com.
Guoping ChenLaboratory of molecular biology of tomato, Bioengineering College, Chongqing University, Chongqing 400044, China. chenguoping@cqu.edu.cn.ORCID 0000-0001-8157-4687
Chongqing University · CNChongqing Academy of Agricultural Sciences · CN

Funding

National Natural Science Foundation of China 31572129Natural Science Foundation of Chongqing cstc2015jcyjA80026Technology System of National Bulk Vegetable Industry-Eggplant Breeding Position CARS-25-A-06
6 · The paper itself

Abstract

MADS-box family genes encode transcription factors that are involved in multiple developmental processes in plants, especially in floral organ specification, fruit development, and ripening. However, a comprehensive analysis of tomato MADS-box family genes, which is an important model plant to study flower fruit development and ripening, remains obscure. To gain insight into the MADS-box genes in tomato, 131 tomato MADS-box genes were identified. These genes could be divided into five groups (Mα, Mβ, Mγ, Mδ, and MIKC) and were found to be located on all 12 chromosomes. We further analyzed the phylogenetic relationships among Arabidopsis and tomato, as well as the protein motif structure and exon-intron organization, to better understand the tomato MADS-box gene family. Additionally, owing to the role of MADS-box genes in floral organ identification and fruit development, the constitutive expression patterns of MADS-box genes at different stages in tomato development were identified. We analyzed 15 tomato MADS-box genes involved in floral organ identification and five tomato MADS-box genes related to fruit development by qRT-PCR. Collectively, our study provides a comprehensive and systematic analysis of the tomato MADS-box genes and would be valuable for the further functional characterization of some important members of the MADS-box gene family.

Indexed as

Genome, PlantGenomicsMultigene FamilyAmino Acid MotifsChromosome MappingConserved SequenceFruitGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGenome-Wide Association StudyMADS Domain ProteinsOrgan SpecificityPhylogenyPlant DevelopmentSolanum lycopersicumMADS Domain ProteinsTranscription Factorsfloral organfruit developmentgenome-wide analysisMADS-boxtomato

Identifiers

PMID31216621
PMCPMC6627509
OpenAlexW2953178467

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.