Evidence map›Paper›PMID 31215859›Full record

ArticleMicrobial genomics2019

Enterohaemorrhagic Escherichia coli O121:H19 acquired an extended-spectrum β-lactamase gene during the development of an outbreak in two nurseries.

Koji Kikuchi, Kenichi Lee, Hiroyuki Ueno, Kentaro Tomari, Sumie Kobori, Akihiko Kaetsu, Mari Matsui, Satowa Suzuki, Tsuyoshi Sekizuka, Makoto Kuroda and 2 more

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Koji KikuchiSaitama City Institute of Health Science and Research, Saitama, Japan.
Kenichi LeeDepartment of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.
Hiroyuki UenoSaitama City Institute of Health Science and Research, Saitama, Japan.
Kentaro TomariSaitama City Institute of Health Science and Research, Saitama, Japan.
Sumie KoboriSaitama City Institute of Health Science and Research, Saitama, Japan.
Akihiko KaetsuSaitama City Health Center, Saitama, Japan.
Mari MatsuiAntimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Satowa SuzukiAntimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan.
Tsuyoshi SekizukaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Makoto KurodaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Motonobu MiyazakiSaitama City Institute of Health Science and Research, Saitama, Japan.
Makoto OhnishiDepartment of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.
National Institute of Infectious Diseases · JPSaitama Prefecture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterohaemorrhagic Escherichia coli (EHEC) is an important human pathogen worldwide. Although serotype O157 is currently the most dominant and important EHEC strain, serotypes O26, O111, O91, O103 and O121 are also recognized as serious pathogens that affect public health. EHEC outbreaks often occur in nurseries and elderly care facilities. In 2012, a nursery outbreak of EHEC O121 occurred during which the bacterium acquired a plasmid-borne extended-spectrum β-lactamase (ESBL) gene. ESBL-producing E. coli O86 was concurrently isolated from one of the EHEC patients. Therefore, we investigated the isolates by whole-genome sequence (WGS) analysis to elucidate the transmission dynamics of the EHEC strains and the ESBL plasmid. According to WGS-based phylogeny, all 17 EHEC O121 isolates were clonal, while E. coli O86 was genetically distant from the EHEC O121 isolates. The complete sequence of an ESBL plasmid encoding the CTX-M-55 β-lactamase was determined using S1-PFGE bands, and subsequent mapping of the WGS reads confirmed that the plasmid sequences from EHEC O121 and E. coli O86 were identical. Furthermore, conjugation experiments showed that the plasmid was capable of conjugative transfer. These results support the hypothesis that EHEC O121 acquired an ESBL-producing plasmid from E. coli O86 during the outbreak. This report demonstrates the importance of implementing preventive measures during EHEC outbreaks to control both secondary infection and the spread of antimicrobial resistance factors.

Indexed as

Disease OutbreaksAdultbeta-LactamasesChild, PreschoolEnterohemorrhagic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFemaleHumansInfantJapanMaleNurseries, InfantPhylogenyPlasmidsbeta-lactamase CTX-M-55, E colibeta-LactamasesEscherichia coli Proteinsantimicrobial resistanceenterohaemorrhagic Escherichia coliextended spectrum β-lactamaseplasmid transferwhole-genome sequence analysis

Identifiers

PMID31215859
PMCPMC6700663
OpenAlexW2952787033

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.