Evidence map›Paper›PMID 31215484›Full record

ArticleBMC cancer2019

Circulating tumor cell and cell-free RNA capture and expression analysis identify platelet-associated genes in metastatic lung cancer.

Tim N Beck, Yanis A Boumber, Charu Aggarwal, Jianming Pei, Catherine Thrash-Bingham, Patricia Fittipaldi, Ramillya Vlasenkova, Chandra Rao, Hossein Borghaei, Massimo Cristofanilli and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  8. Circulating tumour cell isolation, analysis and clinical application.Cellular oncology (Dordrecht, Netherlands) · 2023
    Review
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  15. LRG1: an emerging player in disease pathogenesis.Journal of biomedical science · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Tim N BeckProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.ORCID http://orcid.org/0000-0003-4022-0596
Yanis A BoumberProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Charu AggarwalAbramson Cancer Center and Division of Hematology/Oncology, Department of Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Jianming PeiGenomics Facility, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Catherine Thrash-BinghamProtocol Support Laboratory, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Patricia FittipaldiProtocol Support Laboratory, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Ramillya VlasenkovaKazan Federal University, Kazan, Russian Federation.
Chandra RaoJanssen Diagnostics LLC, Valley, Huntingdon, PA, 19006, USA.
Hossein BorghaeiProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Massimo CristofanilliFeinberg School of Medicine, Robert H Lurie Comprehensive Cancer Center, Chicago, IL, 60611, USA.
Ranee MehraHead and Neck Medical Oncology, University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, 21201, USA.
Ilya SerebriiskiiProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
R Katherine AlpaughProtocol Support Laboratory, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. R.Alpaugh@fccc.edu.
Fox Chase Cancer Center · USJanssen (United States) · USKazan Federal University · RUNorthwestern University · USUniversity of Maryland, Baltimore · USUniversity of Pennsylvania · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Eric Andrew Ross · 1985 to 2026
$138.8M
Targeting Musashi-2 (MSI2) regulation of VEGFR2 / VEGF-A in lung cancerR01CA218802 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI BOUMBER, YANIS · 2018 to 2022
$1.9M
Targeting Musashi-2 (MSI2) regulation of EGFR and HER2 in lung cancerR21CA223394 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI MAKHOV, PETR B. · 2018 to 2019
$436k
Characterization of AMH as part of a novel TGF-beta signaling loopF30CA180607 · NCI · DREXEL UNIVERSITY · PI BECK, TIM NICO · 2014 to 2017
$163k
NCI NIH HHS F30 CA180607NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA218802NCI NIH HHS R21 CA223394NCI NIH HHS R21 CA223394-01A1
6 · The paper itself

Abstract

backgroundCirculating tumor cells (CTC) and plasma cell-free RNA (cfRNA) can serve as biomarkers for prognosis and treatment response in lung cancer. One barrier to the selected or routine use of CTCs and plasma cfRNA in precision oncology is the limited quantity of both, and CTCs are only seen in metastatic disease. As capture of CTCs and plasma cfRNA presents an opportunity to monitor and assess malignancies without invasive procedures, we compared two methods for CTC capture and identification, and profiled mRNA from CTCs and plasma cfRNA to identify potential tumor-associated biomarkers.

methodsPeripheral blood was collected from ten patients with small cell lung cancer (SCLC), ten patients with non-small cell lung cancer (NSCLC) and four healthy volunteers. Two methods were used for CTC capture: the standard epithelial cell adhesion molecule (EpCam) CellSearch kit (unicapture) and EpCAM plus HER2, EGFR and MUC-1 specific combined ferrofluid capture (quadcapture). For the quadcapture, anti-cytokeratin 7 (CK7) was additionally used to assist in CTC identification. NanoString analysis was performed on plasma cfRNA and on mRNA from combined ferrofluid isolated CTCs. Expression data was analyzed using STRING and Reactome.

resultsUnicapture detected CTCs in 40% of NSCLC and 60% of SCLC; whereas, quadcapture/CK7 identified CTCs in 20% of NSCLC and 80% of SCLC. Bioinformatic analysis of NanoString data identified high expression of a platelet factor 4 (PF4)-related group of transcripts.

conclusionsQuadcapture ferrofluid reagent did not significantly improve CTC capture efficacy. NanoString analysis based on CTC and plasma cfRNA data highlighted an intriguing PF-4-centric network in patients with metastatic lung cancer.

Indexed as

Biomarkers, TumorCarcinoma, Non-Small-Cell LungCell-Free Nucleic AcidsEpithelial Cell Adhesion MoleculeHumansLung NeoplasmsNeoplastic Cells, CirculatingPlatelet Factor 4PrognosisSmall Cell Lung CarcinomaBiomarkers, TumorCell-Free Nucleic AcidsEPCAM protein, humanEpithelial Cell Adhesion MoleculePF4 protein, humanPlatelet Factor 4Cell-free RNACirculating tumor cellsNSCLCPlateletsSCLC

Identifiers

PMID31215484
PMCPMC6582501
OpenAlexW2949265339

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.