Evidence map›Paper›PMID 31215403›Full record

ArticleBMC genomics2019

Whole genome sequencing of Asia II 1 species of whitefly reveals that genes involved in virus transmission and insecticide resistance have genetic variances between Asia II 1 and MEAM1 species.

Sonia Hussain, Muhammad Farooq, Hassan Jamil Malik, Imran Amin, Brian E Scheffler, Jodi A Scheffler, Shu-Sheng Liu, Shahid Mansoor

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
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  6. Tracking Adaptive Pathways of Invasive Insects: Novel Insight from Genomics.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Target of rapamycin (Journal of biosciences · 2021
    Article
  15. Yellow Mosaic Disease (YMD) of Mungbean (Frontiers in plant science · 2020
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sonia HussainNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Muhammad FarooqNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Hassan Jamil MalikNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Imran AminNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Brian E SchefflerUSDA-ARS, Genomics and Bioinformatics Research Unit, 141 Experiment Station Rd., Stoneville, MS, 38776, USA.
Jodi A SchefflerUSDA-ARS, Crop Genetics Research Unit, 141 Experiment Station Rd, Stoneville, MS, 38776, USA.
Shu-Sheng LiuInstitute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Shahid MansoorNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan. shahidmansoor7@gmail.com.ORCID http://orcid.org/0000-0001-7418-1826

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWhiteflies (Bemisia tabaci) are phloem sap-sucking pests that because of their broad host range and ability to transmit viruses damage crop plants worldwide. B. tabaci are now known to be a complex of cryptic species that differ from each other in many characteristics such as mode of interaction with viruses, invasiveness, and resistance to insecticides. Asia II 1 is an indigenous species found on the Indian sub-continent and south-east Asia while the species named as Middle East Asia Minor 1 (MEAM1), likely originated from the Middle-East and has spread worldwide in recent decades. The purpose of this study is to find genomic differences between these two species.

resultsSequencing of the nuclear genome of Asia II 1 with Illumina HiSeq and MiSeq generated 198.90 million reads that covers 88% of the reference genome. The sequence comparison with MEAM1 identified 2,327,972 SNPs and 202,479 INDELs. In Total, 1294 genes were detected with high impact variants. The functional analysis revealed that some of the genes are involved in virus transmission including 4 genes in Tomato yellow leaf curl virus (TYLCV) transmission, 96 in Tomato crinivirus (ToCV) transmission, and 14 genes in insecticide resistance.

conclusionsThese genetic differences between Asia II 1 and MEAM1 may underlie the major biological differences between the two species such as virus transmission, insecticide resistance, and range of host plants. The present study provides new genomic data and information resources for Asia II 1 that will not only contribute to the species delimitation of whitefly, but also help in conceiving future research studies to develop more targeted management strategies against whitefly.

Indexed as

Genetic VariationWhole Genome SequencingAnimalsCell NucleusGene OntologyGenes, InsectGenomicsHemipteraInsecticide ResistancePlant VirusesSpecies SpecificityAsia II 1InsecticideMEAM1SequencingVirusWhitefly

Identifiers

PMID31215403
PMCPMC6582559

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.