Evidence map›Paper›PMID 31213632›Full record

ArticleScientific reports2019

LC/MS analysis and deep sequencing reveal the accurate RNA composition in the HIV-1 virion.

Anna Šimonová, Barbora Svojanovská, Jana Trylčová, Martin Hubálek, Ondřej Moravčík, Martin Zavřel, Marcela Pávová, Jan Hodek, Jan Weber, Josef Cvačka and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. tRNA modifications in viral replication.The Journal of biological chemistry · 2026
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  10. NNature communications · 2024
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  13. Honeybee Iflaviruses Pack Specific tRNA Fragments from Host Cells in Their Virions.Chembiochem : a European journal of chemical biology · 2022
    Article
  14. The Role of RNA Modification in HIV-1 Infection.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Anna ŠimonováInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Barbora SvojanovskáInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Jana TrylčováInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Martin HubálekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Ondřej MoravčíkInstitute of Molecular Genetics of the Czech Academy of Sciences, Prague, 14220, Czech Republic.
Martin ZavřelInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Marcela PávováInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Jan HodekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Jan WeberInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.ORCID http://orcid.org/0000-0002-2799-7352
Josef CvačkaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Jan PačesInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic.
Hana CahováInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, 16610, Czech Republic. cahova@uochb.cas.cz.ORCID http://orcid.org/0000-0002-4986-7858
Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry · CZCharles University · CZCzech Academy of Sciences, Institute of Molecular Genetics · CZCzech Academy of Sciences · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanism of action of various viruses has been the primary focus of many studies. Yet, the data on RNA modifications in any type of virus are scarce. Methods for the sensitive analysis of RNA modifications have been developed only recently and they have not been applied to viruses. In particular, the RNA composition of HIV-1 virions has never been determined with sufficiently exact methods. Here, we reveal that the RNA of HIV-1 virions contains surprisingly high amount of the 1-methyladenosine. We are the first to use a liquid chromatography-mass spectrometry analysis (LC/MS) of virion RNA, which we combined with m

Indexed as

AdenosineBase SequenceCell Line, TumorChromatography, LiquidGenome, ViralHigh-Throughput Nucleotide SequencingHIV-1HumansMass SpectrometryRNA, Small CytoplasmicRNA, TransferRNA, ViralSignal Recognition ParticleVirionVirus Assembly1-methyladenosine7SL RNAAdenosineRNA, Small CytoplasmicRNA, TransferRNA, ViralSignal Recognition Particle

Identifiers

PMID31213632
PMCPMC6581912
OpenAlexW2949648903

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.