Evidence map›Paper›PMID 31212691›Full record

ArticleInternational journal of molecular sciences2019

Stabilization of Intrinsically Disordered DKK2 Protein by Fusion to RNA-Binding Domain.

Hye Min Lee, Soon Bin Kwon, Ahyun Son, Doo Hyun Kim, Kyun-Hwan Kim, Jonghyo Lim, Young-Guen Kwon, Jin Sun Kang, Byung Kyu Lee, Young Ho Byun and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Intrinsically Disordered Proteins: An Overview.International journal of molecular sciences · 2022
    Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Hye Min LeeDepartment of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul 03722, Korea. wtingfm@naver.com.
Soon Bin KwonDepartment of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul 03722, Korea. yunbin829@gmail.com.
Ahyun SonDepartment of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul 03722, Korea. 50hyuny@naver.com.ORCID 0000-0002-7979-0409
Doo Hyun KimDepartment of Pharmacology, and Center for Cancer Research and Diagnostic Medicine, IBST, School of Medicine, Konkuk University, Seoul 05030, Korea. eesli@naver.com.
Kyun-Hwan KimDepartment of Pharmacology, and Center for Cancer Research and Diagnostic Medicine, IBST, School of Medicine, Konkuk University, Seoul 05030, Korea. khkim10@kku.ac.kr.ORCID 0000-0001-5266-072X
Jonghyo LimDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea. jhyolim@naver.com.
Young-Guen KwonDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Korea. ygkwon@yonsei.ac.kr.
Jin Sun KangProCell R&D Institute, ProCell Therapeutics, Inc., Ace-Twin Tower II, Guro3-dong, Guro-gu, Seoul 08381, Korea. jskang@procellrx.co.kr.
Byung Kyu LeeProCell R&D Institute, ProCell Therapeutics, Inc., Ace-Twin Tower II, Guro3-dong, Guro-gu, Seoul 08381, Korea. bklee@procellrx.co.kr.
Young Ho ByunDepartment of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul 03722, Korea. flu1918h1n1@naver.com.
Baik L SeongDepartment of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul 03722, Korea. blseong@yonsei.ac.kr.ORCID 0000-0002-7301-082X
Yonsei University · KRKonkuk University · KR

Funding

The Ministry of Health and Welfare of the Korean government HI13C0826, HI15C2934, HI15C2875
6 · The paper itself

Abstract

Intrinsic disorders are a common feature of hub proteins in eukaryotic interactomes controlling the signaling pathways. The intrinsically disordered proteins (IDPs) are prone to misfolding, and maintaining their functional stability remains a major challenge in validating their therapeutic potentials. Considering that IDPs are highly enriched in RNA-binding proteins (RBPs), here we reasoned and confirmed that IDPs could be stabilized by fusion to RBPs. Dickkopf2 (DKK2), Wnt antagonist and a prototype IDP, was fused with lysyl-tRNA synthetase (LysRS), with or without the fragment crystallizable (Fc) domain of an immunoglobulin and expressed predominantly as a soluble form from a bacterial host. The functional competence was confirmed by in vitro Wnt signaling reporter and tube formation in human umbilical vein endothelial cells (HUVECs) and in vivo Matrigel plug assay. The removal of LysRS by site-specific protease cleavage prompted the insoluble aggregation, confirming that the linkage to RBP chaperones the functional competence of IDPs. While addressing to DKK2 as a key modulator for cancer and ischemic vascular diseases, our results suggest the use of RBPs as stabilizers of disordered proteinaceous materials for acquiring and maintaining the structural stability and functional competence, which would impact the druggability of a variety of IDPs from human proteome.

Indexed as

HumansHuman Umbilical Vein Endothelial CellsIntercellular Signaling Peptides and ProteinsIntrinsically Disordered ProteinsLysine-tRNA LigaseRNA-Binding MotifsRNA-Binding ProteinsWnt Signaling PathwayDKK2 protein, humanIntercellular Signaling Peptides and ProteinsIntrinsically Disordered ProteinsLysine-tRNA LigaseRNA-Binding ProteinsangiogenesisDKK2IDPsRBPsWnt signaling

Identifiers

PMID31212691
PMCPMC6600415
OpenAlexW2951874102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.