Evidence map›Paper›PMID 31211814›Full record

Trial reportPLoS pathogens2019

Systems analysis of subjects acutely infected with the Chikungunya virus.

Alessandra Soares-Schanoski, Natália Baptista Cruz, Luíza Antunes de Castro-Jorge, Renan Villanova Homem de Carvalho, Cliomar Alves Dos Santos, Nancy da Rós, Úrsula Oliveira, Danuza Duarte Costa, Cecília Luíza Simões Dos Santos, Marielton Dos Passos Cunha and 15 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

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  20. Mayaro virus pathogenesis and immunity in rhesus macaques.PLoS neglected tropical diseases · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 3 countries.

Alessandra Soares-SchanoskiBacteriology Laboratory, Butantan Institute, São Paulo, Brazil.ORCID 0000-0002-6514-8458
Natália Baptista CruzDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.ORCID 0000-0002-8864-4139
Luíza Antunes de Castro-JorgeDepartamento de Biologia Celular, Molecular e Bioagentes Patogênicos, Faculdade de Medicina de Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil.ORCID 0000-0002-1595-3037
Renan Villanova Homem de CarvalhoDepartamento de Biologia Celular, Molecular e Bioagentes Patogênicos, Faculdade de Medicina de Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil.ORCID 0000-0001-5740-0652
Cliomar Alves Dos SantosHealth Foundation Parreiras Horta, Central Laboratory of Public Health (LACEN/SE), State Secretary for Health, Sergipe, Brazil.
Nancy da RósSpecial Laboratory for Applied Toxinology, Butantan Institute, São Paulo, Brazil.
Úrsula OliveiraSpecial Laboratory for Applied Toxinology, Butantan Institute, São Paulo, Brazil.
Danuza Duarte CostaHealth Foundation Parreiras Horta, Central Laboratory of Public Health (LACEN/SE), State Secretary for Health, Sergipe, Brazil.
Cecília Luíza Simões Dos SantosRespiratory Diseases Division, Virology Center, Adolfo Lutz Institute, Sao Paulo, Brazil.ORCID 0000-0002-2826-0547
Marielton Dos Passos CunhaLaboratory of Molecular Evolution and Bioinformatics, Department of Microbiology, Biomedical Sciences Institute, University of São Paulo, São Paulo, Brazil.ORCID 0000-0002-2102-631X
Maria Leonor Sarno OliveiraBacteriology Laboratory, Butantan Institute, São Paulo, Brazil.ORCID 0000-0003-4849-3062
Juliana Cardoso AlvesDivision of Immunology and Molecular Biology Laboratory, University Hospital/EBSERH, Federal University of Sergipe, Sergipe, Brazil.ORCID 0000-0001-9294-3257
Regina Adalva de Lucena Couto OcéaDivision of Immunology and Molecular Biology Laboratory, University Hospital/EBSERH, Federal University of Sergipe, Sergipe, Brazil.
Danielle Rodrigues RibeiroDivision of Immunology and Molecular Biology Laboratory, University Hospital/EBSERH, Federal University of Sergipe, Sergipe, Brazil.
André Nicolau Aquime GonçalvesDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.ORCID 0000-0001-5264-8368
Patricia Gonzalez-DiasDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.ORCID 0000-0002-6434-3841
Andreas SuhrbierQIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia.ORCID 0000-0001-8986-9025
Paolo Marinho de Andrade ZanottoLaboratory of Molecular Evolution and Bioinformatics, Department of Microbiology, Biomedical Sciences Institute, University of São Paulo, São Paulo, Brazil.
Inácio Junqueira de AzevedoSpecial Laboratory for Applied Toxinology, Butantan Institute, São Paulo, Brazil.ORCID 0000-0003-4491-0180
Dario S ZamboniDepartamento de Biologia Celular, Molecular e Bioagentes Patogênicos, Faculdade de Medicina de Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil.ORCID 0000-0002-7856-7512
Roque Pacheco AlmeidaDivision of Immunology and Molecular Biology Laboratory, University Hospital/EBSERH, Federal University of Sergipe, Sergipe, Brazil.
Paulo Lee HoBacteriology Service, Bioindustrial Division, Butantan Institute, São Paulo, Brazil.ORCID 0000-0003-3652-241X
Jorge KalilHeart Institute, Faculty of Medicine, University of São Paulo, São Paulo, Brazil.ORCID 0000-0001-8415-4274
Milton Yutaka NishiyamaSpecial Laboratory for Applied Toxinology, Butantan Institute, São Paulo, Brazil.ORCID 0000-0002-2410-0562
Helder I NakayaDepartment of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.ORCID 0000-0001-5297-9108
Universidade de São Paulo · BRInstituto Butantan · BRUniversidade Federal de Sergipe · BRInstituto Adolfo Lutz · BRHealth Foundation · GBQIMR Berghofer Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The largest ever recorded epidemic of the Chikungunya virus (CHIKV) broke out in 2004 and affected four continents. Acute symptomatic infections are typically associated with the onset of fever and often debilitating polyarthralgia/polyarthritis. In this study, a systems biology approach was adopted to analyze the blood transcriptomes of adults acutely infected with the CHIKV. Gene signatures that were associated with viral RNA levels and the onset of symptoms were identified. Among these genes, the putative role of the Eukaryotic Initiation Factor (eIF) family genes and apolipoprotein B mRNA editing catalytic polypeptide-like (APOBEC3A) in the CHIKV replication process were displayed. We further compared these signatures with signatures induced by the Dengue virus infection and rheumatoid arthritis. Finally, we demonstrated that the CHIKV in vitro infection of murine bone marrow-derived macrophages induced IL-1 beta production in a mechanism that is significantly dependent on the inflammasome NLRP3 activation. The observations provided valuable insights into virus-host interactions during the acute phase and can be instrumental in the investigation of new and effective therapeutic interventions.

Indexed as

AdultAnimalsArthritisChikungunya FeverChikungunya virusCytidine DeaminaseDengue VirusFemaleFeverFollow-Up StudiesHumansInterleukin-1betaMiceNLR Family, Pyrin Domain-Containing 3 ProteinProteinsVirus ReplicationAPOBEC3A protein, humanCytidine DeaminaseIL1B protein, humanInterleukin-1betaNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanProteins

Identifiers

PMID31211814
PMCPMC6599120
OpenAlexW2949362157

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.