ArticleDatabase : the journal of biological databases and curation2019
SpinachBase: a central portal for spinach genomics.
Article in Database : the journal of biological databases and curation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Identification of carnivory in the flowering plant Saxifraga via multidisciplinary evidence.Nature communications · 2026Article
- Genome-wide association and genomic prediction of anthracnose (Colletotrichum dematium) resistance in spinach.The plant genome · 2026Article
- Genome-wide association study and genomic prediction of fruit weight in spinach.Scientific reports · 2026Article
- Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Identification of a Broad Bean Wilt Virus 2 (BBWV2) Isolate (BBWV2-SP) fromInternational journal of molecular sciences · 2025Article
- Improving genomic prediction of vitamin C content in spinach using GWAS-derived markers.BMC genomics · 2025Article
- Genome-wide association study and genome prediction of tallness trait in spinach phenotyping.Frontiers in plant science · 2025Article
- Dual transcriptional characterization of spinach and Peronospora effusa during resistant and susceptible race-cultivar interactions.BMC genomics · 2024Article
- Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review.Molecular breeding : new strategies in plant improvement · 2024Article
- A high-efficiency transient expression system mediated by Agrobacterium tumefaciens in Spinacia oleracea leaves.Plant methods · 2024Article
- Genome-wide characterization, functional analysis, and expression profiling of the Aux/IAA gene family in spinach.BMC genomics · 2024Article
- A Genome-Wide Association Study Reveals the Genetic Mechanisms of Nutrient Accumulation in Spinach.Genes · 2024Article
- Improvement of crop production in controlled environment agriculture through breeding.Frontiers in plant science · 2024Review
- Article
- Identification and characterization of Glycolate oxidase gene family in garden lettuce (Lactuca sativa cv. 'Salinas') and its response under various biotic, abiotic, and developmental stresses.Scientific reports · 2023Article
- Status of genome function annotation in model organisms and crops.Plant direct · 2023Article
- Effects of Wet and Dry Micronization on the GC-MS Identification of the Phenolic Compounds and Antioxidant Properties of Freeze-Dried Spinach Leaves and Stems.Molecules (Basel, Switzerland) · 2022Article
- Genome-wide association study and genomic prediction of white rust resistance in USDA GRIN spinach germplasm.Horticulture research · 2022Article
- Effect of SARS-CoV-2 infection on asthma patients.Frontiers in medicine · 2022Article
- Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits.Nature communications · 2021Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Spinach (Spinacia oleracea L.) is a nutritious vegetable enriched with many essential minerals and vitamins. A reference spinach genome has been recently released, and additional spinach genomic resources are being rapidly developed. Therefore, there is an urgent need of a central database to store, query, analyze and integrate various resources of spinach genomic data. To this end, we developed SpinachBase (http://spinachbase.org), which provides centralized public accesses to genomic data as well as analytical tools to assist research and breeding in spinach. The database currently stores the spinach reference genome sequence, and sequences and comprehensive functional annotations of protein-coding genes predicted from the genome. The database also contains gene expression profiles derived from RNA-Seq experiments as well as highly co-expressed genes and genetic variants called from transcriptome sequences of 120 cultivated and wild Spinacia accessions. Biochemical pathways have been predicted from spinach protein-coding genes and are available through a pathway database (SpinachCyc) within SpinachBase. SpinachBase provides a suite of analysis and visualization tools including a genome browser, sequence similarity searches with BLAST, functional enrichment and functional classification analyses and functions to query and retrieve gene sequences and annotations.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.