Evidence map›Paper›PMID 31211389›Full record

ArticleJournal of experimental botany2019

NF-YC12 is a key multi-functional regulator of accumulation of seed storage substances in rice.

Yufei Xiong, Ye Ren, Wang Li, Fengsheng Wu, Wenjie Yang, Xiaolong Huang, Jialing Yao

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 130 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yufei XiongCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Ye RenCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Wang LiCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Fengsheng WuCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Wenjie YangCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Xiaolong HuangThe Key Laboratory of Plant Physiology and Development Regulation, School of Life Sciences, Guizhou Normal University, Guiyang, China.
Jialing YaoCollege of Life Science and Technology, Huazhong Agricultural University, Wuhan, China.
Huazhong Agricultural University · CNGuizhou Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Starch and storage proteins, the primary storage substances of cereal endosperm, are a major source of food for humans. However, the transcriptional regulatory networks of the synthesis and accumulation of storage substances remain largely unknown. Here, we identified a rice endosperm-specific gene, NF-YC12, that encodes a putative nuclear factor-Y transcription factor subunit C. NF-YC12 is expressed in the aleurone layer and starchy endosperm during grain development. Knockout of NF-YC12 significantly decreased grain weight as well as altering starch and protein accumulation and starch granule formation. RNA-sequencing analysis revealed that in the nf-yc12 mutant genes related to starch biosynthesis and the metabolism of energy reserves were enriched in the down-regulated category. In addition, starch and protein contents in seeds differed between NF-YC12-overexpression lines and the wild-type. NF-YC12 was found to interact with NF-YB1. ChIP-qPCR and yeast one-hybrid assays showed that NF-YC12 regulated the rice sucrose transporter OsSUT1 in coordination with NF-YB1 in the aleurone layer. In addition, NF-YC12 was directly bound to the promoters of FLO6 (FLOURY ENDOSPERM6) and OsGS1;3 (glutamine synthetase1) in developing endosperm. This study demonstrates a transcriptional regulatory network involving NF-YC12, which coordinates multiple pathways to regulate endosperm development and the accumulation of storage substances in rice seeds.

Indexed as

CCAAT-Binding FactorGene Expression Regulation, PlantOryzaPlant ProteinsSeedsTranscription FactorsCCAAT-Binding FactorPlant ProteinsTranscription FactorsGrain fillingNF-Y factorrice (Oryza sativa)seed specific expressionstorage substance accumulationtranscriptional regulation

Identifiers

PMID31211389
PMCPMC6685661
OpenAlexW2937259250

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.