Evidence map›Paper›PMID 31209336›Full record

ArticleNature medicine2019

A cellular census of human lungs identifies novel cell states in health and in asthma.

Felipe A Vieira Braga, Gozde Kar, Marijn Berg, Orestes A Carpaij, Krzysztof Polanski, Lukas M Simon, Sharon Brouwer, Tomás Gomes, Laura Hesse, Jian Jiang and 25 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 564 papers.

0numbers the graph read from it
0cells of the map it votes in
564citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

564 citing papers in PubMed.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Clinical phenotypes in αERJ open research · 2026
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

504 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Felipe A Vieira Braga *Wellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0003-0206-9258
Gozde Kar *Wellcome Sanger Institute, Cambridge, UK.
Marijn Berg *Department of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Orestes A Carpaij *Groningen Research Institute for Asthma and COPD, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Krzysztof Polanski *Wellcome Sanger Institute, Cambridge, UK.
Lukas M SimonInstitute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.ORCID http://orcid.org/0000-0001-6148-8861
Sharon BrouwerDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Tomás GomesWellcome Sanger Institute, Cambridge, UK.
Laura HesseDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Jian JiangDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Eirini S FasouliWellcome Sanger Institute, Cambridge, UK.
Mirjana EfremovaWellcome Sanger Institute, Cambridge, UK.
Roser Vento-TormoWellcome Sanger Institute, Cambridge, UK.
Carlos Talavera-LópezWellcome Sanger Institute, Cambridge, UK.
Marnix R JonkerDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Karen AffleckAllergic Inflammation Discovery Performance Unit, Respiratory Therapy Area, GlaxoSmithKline, Stevenage, UK.
Subarna PalitInstitute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.
Paulina M StrzeleckaWellcome Sanger Institute, Cambridge, UK.
Helen V FirthWellcome Sanger Institute, Cambridge, UK.
Krishnaa T MahbubaniDepartment of Surgery, NIHR Cambridge Biomedical Research Centre, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-1327-2334
Ana CvejicWellcome Sanger Institute, Cambridge, UK.
Kerstin B MeyerWellcome Sanger Institute, Cambridge, UK.ORCID http://orcid.org/0000-0001-5906-1498
Kourosh Saeb-ParsyDepartment of Surgery, NIHR Cambridge Biomedical Research Centre, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-0633-3696
Marjan LuingeDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Corry-Anke BrandsmaDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Wim TimensDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.ORCID http://orcid.org/0000-0002-4146-6363
Ilias AngelidisHelmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany.
Maximilian StrunzHelmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany.
Gerard H KoppelmanGroningen Research Institute for Asthma and COPD, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Antoon J van OosterhoutAllergic Inflammation Discovery Performance Unit, Respiratory Therapy Area, GlaxoSmithKline, Stevenage, UK.
Herbert B SchillerHelmholtz Zentrum München, Institute of Lung Biology and Disease, Member of the German Center for Lung Research (DZL), Munich, Germany.
Fabian J TheisInstitute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-2419-1943
Maarten van den BergeGroningen Research Institute for Asthma and COPD, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands.
Martijn C NawijnDepartment of Pathology and Medical Biology, University Medical Center Groningen, University of Groningen, Groningen, the Netherlands. m.c.nawijn@umcg.nl.ORCID http://orcid.org/0000-0003-3372-6521
Sarah A TeichmannWellcome Sanger Institute, Cambridge, UK. st9@sanger.ac.uk.ORCID http://orcid.org/0000-0002-6294-6366

Funding

Medical Research Council MC_PC_12009
6 · The paper itself

Abstract

Human lungs enable efficient gas exchange and form an interface with the environment, which depends on mucosal immunity for protection against infectious agents. Tightly controlled interactions between structural and immune cells are required to maintain lung homeostasis. Here, we use single-cell transcriptomics to chart the cellular landscape of upper and lower airways and lung parenchyma in healthy lungs, and lower airways in asthmatic lungs. We report location-dependent airway epithelial cell states and a novel subset of tissue-resident memory T cells. In the lower airways of patients with asthma, mucous cell hyperplasia is shown to stem from a novel mucous ciliated cell state, as well as goblet cell hyperplasia. We report the presence of pathogenic effector type 2 helper T cells (T

Indexed as

AdultAgedAsthmaCD4-Positive T-LymphocytesCell CommunicationEpithelial CellsFemaleGenome-Wide Association StudyGoblet CellsHumansLungMaleMetaplasiaMiddle AgedTh2 CellsTranscriptome

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.