Evidence map›Paper›PMID 31209232›Full record

ArticleScientific reports2019

RNA interference core components identified and characterised in Verticillium nonalfalfae, a vascular wilt pathogenic plant fungi of hops.

Taja Jeseničnik, Nataša Štajner, Sebastjan Radišek, Jernej Jakše

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. RNA-Based Control of Fungal Pathogens in Plants.International journal of molecular sciences · 2023
    Review
  3. Discovery of microRNA-like Small RNAs in Pathogenic Plant FungusInternational journal of molecular sciences · 2022
    Article
  4. Review
  5. Article
  6. Review
  7. Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Taja JeseničnikUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, 1000, Slovenia.
Nataša ŠtajnerUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, 1000, Slovenia.
Sebastjan RadišekSlovenian Institute of Hop Research and Brewing, Žalec, 3310, Slovenia.
Jernej JakšeUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, 1000, Slovenia. Jernej.Jakse@bf.uni-lj.si.ORCID http://orcid.org/0000-0002-8907-1627
University of Ljubljana · SISlovenian Institute of Hop Research and Brewing · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The conserved RNA interference mechanism (RNAi) in the fungal kingdom has become a focus of intense scientific investigation. The three catalytic core components, Dicer-like (DCL), Argonaute (AGO), and RNA-dependent RNA polymerase (RdRP), and their associated small interfering RNA molecules (siRNAs) have been identified and characterised in several fungal species. Recent studies have proposed that RNAi is a major contributor to the virulence of fungal pathogens as a result of so-called trans-kingdom RNA silencing. In the present study, we report on the existence of three core RNAi proteins in the pathogenic plant fungus Verticillium nonalfalfae, which is a soilborne plant pathogen that causes severe wilting disease in hops (Humulus lupulus L.). Two DCL proteins, two AGO proteins, and two RdRP proteins were identified, and their conserved RNAi domains were characterised. Our phylogeny results confirm the existing taxonomic relationships in the Ascomycete fungal phylum and show that the fungi of the Hypocreomycetidae subclass of the Sordariomycetes class have high amino acid sequence similarity. The expression analysis revealed a potential role of RNAi in the pathogenicity of the fungi, since all the RNAi genes were highly upregulated in the highly virulent isolate T2 and were also differentially expressed in the V. nonalfalfae-susceptible Celeia and V. nonalfalfae-resistant Wye Target cultivars.

Indexed as

RNA InterferenceArgonaute ProteinsBase SequenceConserved SequenceFungal ProteinsGene Expression Regulation, FungalHumulusPhylogenyPlant DiseasesProtein IsoformsRibonuclease IIIRNA-Dependent RNA PolymeraseRNA, FungalRNA, Small InterferingVerticilliumVirulenceArgonaute ProteinsFungal ProteinsProtein IsoformsRibonuclease IIIRNA-Dependent RNA PolymeraseRNA, FungalRNA, Small Interfering

Identifiers

PMID31209232
PMCPMC6572790
OpenAlexW2951418940

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.