Evidence map›Paper›PMID 31209220›Full record

ArticleNature communications2019

Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase.

Soo Y Ro, Luis F Schachner, Christopher W Koo, Rahul Purohit, Jonathan P Remis, Grace E Kenney, Brandon W Liauw, Paul M Thomas, Steven M Patrie, Neil L Kelleher and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
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  9. Structures of methane and ammonia monooxygenases in native membranes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  14. Review
  15. Article
  16. Immunocomplexed Antigen Capture and Identification by Native Top-Down Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2023
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Soo Y RoDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Luis F SchachnerDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.ORCID http://orcid.org/0000-0001-6157-0937
Christopher W KooDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Rahul PurohitDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Jonathan P RemisDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Grace E KenneyDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.ORCID http://orcid.org/0000-0002-9579-3351
Brandon W LiauwDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Paul M ThomasDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.ORCID http://orcid.org/0000-0003-2887-4765
Steven M PatrieDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA.
Neil L KelleherDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA. n-kelleher@northwestern.edu.ORCID http://orcid.org/0000-0002-8815-3372
Amy C RosenzweigDepartments of Molecular Biosciences and of Chemistry, Northwestern University, 2205 Tech Drive, Evanston, IL, 60208, USA. amyr@northwestern.edu.ORCID http://orcid.org/0000-0001-8472-4134
Northwestern University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
Metalloenzymes and metal homeostasisR35GM118035 · NIGMS · NORTHWESTERN UNIVERSITY · PI AMY C. ROSENZWEIG · 2016 to 2026
$7.1M
Chemistry of Life Processes Predoctoral Training ProgramT32GM105538 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2013 to 2022
$2.7M
Acquisition of a Thermo Fisher Scientific Q Exactive UHMR mass spectrometerS10OD025194 · OD · NORTHWESTERN UNIVERSITY · PI COMPTON, PHILIP DANIEL · 2018 to 2018
$795k
NCI NIH HHS P30 CA060553NIGMS NIH HHS R35 GM118035NIGMS NIH HHS T32 GM008061NIGMS NIH HHS T32 GM105538NIH HHS S10 OD025194U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1S10OD025194-01U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM118035U.S. Department of Health & Human Services | National Institutes of Health (NIH) NCI CCSG P30 CA060553U.S. Department of Health & Human Services | National Institutes of Health (NIH) T32GM105538
6 · The paper itself

Abstract

Aerobic methane oxidation is catalyzed by particulate methane monooxygenase (pMMO), a copper-dependent, membrane metalloenzyme composed of subunits PmoA, PmoB, and PmoC. Characterization of the copper active site has been limited by challenges in spectroscopic analysis stemming from the presence of multiple copper binding sites, effects of detergent solubilization on activity and crystal structures, and the lack of a heterologous expression system. Here we utilize nanodiscs coupled with native top-down mass spectrometry (nTDMS) to determine the copper stoichiometry in each pMMO subunit and to detect post-translational modifications (PTMs). These results indicate the presence of a mononuclear copper center in both PmoB and PmoC. pMMO-nanodisc complexes with a higher stoichiometry of copper-bound PmoC exhibit increased activity, suggesting that the PmoC copper site plays a role in methane oxidation activity. These results provide key insights into the pMMO copper centers and demonstrate the ability of nTDMS to characterize complex membrane-bound metalloenzymes.

Indexed as

Models, MolecularBacterial ProteinsBinding SitesBiocatalysisCatalytic DomainCopperCryoelectron MicroscopyMass SpectrometryMethaneMethanolMethylococcaceaeOxidation-ReductionOxygenasesProtein Processing, Post-TranslationalBacterial ProteinsCopperMethanemethane monooxygenaseMethanolOxygenases

Identifiers

PMID31209220
PMCPMC6572826
OpenAlexW2952339975

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.