Evidence map›Paper›PMID 31208450›Full record

ArticleBMC research notes2019

Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm.

Tetsuya Komatsu, Kenji Ohya, Kotaro Sawai, Justice Opare Odoi, Keiko Otsu, Atsushi Ota, Toshihiro Ito, Mikihiko Kawai, Fumito Maruyama

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. ComprehensiveMicrobial genomics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 3 countries.

Tetsuya KomatsuAichi Prefectural Chuo Livestock Hygiene Service Center, 1-306 Jizouno, Miaicho, Okazaki, 4440805, Japan.
Kenji OhyaLaboratory of Veterinary Microbiology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.
Kotaro SawaiLaboratory of Veterinary Microbiology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.
Justice Opare OdoiUnited Graduate School of Veterinary Sciences, Gifu University, 1-1 Yanagido, Gifu, 5011193, Japan.
Keiko OtsuGifu Prefectural Chuo Livestock Hygiene Service Center, 1-1 Yanagido, Gifu, 5011112, Japan.
Atsushi OtaData Science Center, Division of Biological Science, Nara Institute of Science and Technology, Ikoma, Nara, 6300192, Japan.
Toshihiro ItoDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan.
Mikihiko KawaiDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan.
Fumito MaruyamaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto, 6068501, Japan. maruyama.fumito.5e@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0003-2347-616X
Kyoto University · JPGifu University · JPMatsumoto Livestock Hygiene Service Center · JPNara Institute of Science and Technology · JPNational Institute of Animal Health · JPNational Institute of Health Sciences · JPUniversidad de La Frontera · CL

Funding

AMED 17fk0108116h0401Ito Foundation for Research H28-130Ito Foundation for Research H30-60Japan Racing Association H28-29_239Japan Racing Association H29-30_7KAKENHI 16H01782KAKENHI 16H05501KAKENHI JP18K19674KAKENHI JP26304039MEXT Japanese government scholarshipResearch Center for Zoonosis Control in Hokkaido University Joint Research Program
6 · The paper itself

Abstract

objectivesMycolicibacterium peregrinum, a rapidly growing mycobacterial species, can opportunistically infect humans and other animals. Although M. peregrinum infections in animals have been reported, the infection sources are unknown, as is information on its virulence and drug resistant genes, which limits our current understanding of this bacterium. To address this knowledge gap, we obtained draft genome sequences for two M. peregrinum isolates; one from a case of pig lymphadenitis and one from the pig farm's soil. DATA DESCRIPTION: We report here the draft genome sequences of M. peregrinum isolates 131_1 and 138 (6,451,733-bp and 6,479,047-bp). They were isolated from a pig with mesenteric lymph node lymphadenitis and from soil on the Japanese farm where the pig was reared. A sequence alignment identity score of 100% was obtained by in silico DNA-DNA hybridization of the two isolates, while 98.28% (isolate 131_1) and 98.27% (isolate 138) scores were recorded for hybridization with a human isolate. Both isolates carry arr-1, AAC(2')-Ib, RbpA, mtrA and tap drug-resistance genes. Isolates 131_1 and 138 carry 234 and 236 putative virulence genes, respectively. Therefore, environment M. peregrinum is potentially drug resistant and can cause swine lymphadenitis. Our data provides valuable new information for future studies on nontuberculous mycobacteria.

Indexed as

Soil MicrobiologyAnimalsDrug Resistance, Multiple, BacterialFarmsGenome, BacterialHumansJapanLymphadenitisMicrobial Sensitivity TestsMycobacteriaceaeSequence Analysis, DNASwineSwine DiseasesVirulenceDraft genome sequenceDrug resistanceIn silico DNA–DNA hybridizationMycobacteriumMycolicibacterium peregrinumPigPig farmVirulence

Identifiers

PMID31208450
PMCPMC6580614
OpenAlexW2953307385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.