ArticleBMC plant biology2019
Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.).
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.
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Who cites it
25 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.
- Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice.BMC genomics · 2024Pooled it
- Multi-model genome-wide association studies identify stable QTLs and candidate genes for lodging resistance inFrontiers in plant science · 2026Article
- Uncovering genetic determinants of antioxidant properties in Thai landrace rice through genome-wide association analysis.Scientific reports · 2025Article
- Genome-wide association study of metabolic traits in the giant duckweed Spirodela polyrhiza.Plant biology (Stuttgart, Germany) · 2025Article
- Identification of significant SNPs and candidate loci for blast disease resistance via GWAS and population structure analysis in ARC panel ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Resistance haplotypes to green rice leafhopper (Breeding science · 2024Article
- Genome wide association studies on seven yield-related traits of 183 rice varieties in Bangladesh.Plant direct · 2024Article
- Deciphering the Genetic Basis of Allelopathy in japonica Rice Cultivated in Temperate Regions Using a Genome-Wide Association Study.Rice (New York, N.Y.) · 2024Article
- Population Structure and Genetic Diversity of Shanlan Landrace Rice for GWAS of Cooking and Eating Quality Traits.International journal of molecular sciences · 2024Article
- New insights into QTNs and potential candidate genes governing rice yield via a multi-model genome-wide association study.BMC plant biology · 2024Article
- Article
- Genetic diversity and genome-wide association study of 13 agronomic traits in 977 Beta vulgaris L. germplasms.BMC genomics · 2023Article
- Multi-model genome-wide association studies for appearance quality in rice.Frontiers in plant science · 2023Article
- Seed Bio-priming of wheat with a novel bacterial strain to modulate drought stress in Daegu, South Korea.Frontiers in plant science · 2023Article
- Genome-Wide Association Study of Zinc Toxicity Tolerance within a Rice Core Collection (Plants (Basel, Switzerland) · 2022Article
- Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions.Rice (New York, N.Y.) · 2022Article
- Genome-wide association study reveals novel genomic regions governing agronomic and grain quality traits and superior allelic combinations for Basmati rice improvement.Frontiers in plant science · 2022Article
- Genetic diversity of wild rice accessions (Frontiers in plant science · 2022Article
- Dissection of the Genetic Basis of Rice Panicle Architecture Using a Genome-wide Association Study.Rice (New York, N.Y.) · 2021Article
- Genome-wide association study and its applications in the non-model crop Sesamum indicum.BMC plant biology · 2021Review
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4 authors at 1 institution in 1 country.
Funding
Abstract
backgroundCultivated rice (Oryza sativa L.) is one of the staple food for over half of the world's population. Thus, improvement of cultivated rice is important for the development of the world. It has been shown that abundant elite genes exist in rice landraces in previous studies.
resultsA genome-wide association study (GWAS) performed with EMMAX for 12 agronomic traits measured in both Guangzhou and Hangzhou was carried out using 150 accessions of Ting's core collection selected based on 48 phenotypic traits from 2262 accessions of Ting's collection, the GWAS included more than 3.8 million SNPs. Within Ting's core collection, which has a simple population structure, low relatedness, and rapid linkage disequilibrium (LD) decay, we found 32 peaks located closely to previously cloned genes such as Hd1, SD1, Ghd7, GW8, and GL7 or mapped QTL, and these loci might be natural variations in the cloned genes or QTL which influence potentially agronomic traits. Furthermore, we also detected 32 regions where new genes might be located, and some peaks of these new candidate genes such as the signal on chromosome 11 for heading days were even higher than that of Hd1. Detailed annotation of these significant loci were shown in this study. Moreover, according to the estimated LD decay distance of 100 to 350 kb on the 12 chromosomes in this study, we found 13 identical significant regions in the two locations.
conclusionsThis research provided important information for further mining these elite genes within Ting's core collection and using them for rice breeding.
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