Evidence map›Paper›PMID 31207229›Full record

ArticleThe Journal of investigative dermatology2019

Genetic Mutations Underlying Phenotypic Plasticity in Basosquamous Carcinoma.

Audris Chiang, Caroline Z Tan, François Kuonen, Luqman M Hodgkinson, Felicia Chiang, Raymond J Cho, Andrew P South, Jean Y Tang, Anne Lynn S Chang, Kerri E Rieger and 2 more

Abstract read
In one paragraph

Article in The Journal of investigative dermatology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Applying Multiomics to Basosquamous Carcinoma.The Journal of investigative dermatology · 2024
    Article
  5. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Audris ChiangDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA; University of California, Irvine School of Medicine, Irvine, California, USA.
Caroline Z TanDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
François KuonenDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
Luqman M HodgkinsonDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
Felicia ChiangDepartment of Civil and Environmental Engineering, University of California, Irvine, Irvine, California, USA.
Raymond J ChoDepartment of Dermatology, University of California, San Francisco, San Francisco, California, USA.
Andrew P SouthDepartment of Dermatology and Cutaneous Biology, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.
Jean Y TangDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
Anne Lynn S ChangDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
Kerri E RiegerDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA; Department of Pathology, Stanford University School of Medicine, Stanford, California, USA.
Anthony E OroDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA.
Kavita Y SarinDepartment of Dermatology, Stanford University School of Medicine, Stanford, California, USA. Electronic address: ksarin@stanford.edu.
Stanford University · USThomas Jefferson University · USUniversity of California, Irvine · USUniversity of California, San Francisco · US

Funding

Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI · 2007 to 2026
$71.4M
STROMAL REGULATION OF BASAL CELL CARCINOMA FORMATIONR01AR046786 · NIAMS · STANFORD UNIVERSITY · PI Anthony E Oro · 2001 to 2026
$9.5M
REGULATING GLI FUNCTION IN HAIR FOLLICLE PROGENITORSR01AR054780 · NIAMS · STANFORD UNIVERSITY · PI ORO, ANTHONY E · 2007 to 2017
$4.3M
Regulating Gli Function in Hair Follicle ProgenitorsR37AR054780 · NIAMS · STANFORD UNIVERSITY · PI Anthony E Oro · 2019 to 2026
$3.7M
Repurposing systemic therapies to improve clinical outcomes in advanced basal cell cancerK23CA211793 · NCI · STANFORD UNIVERSITY · PI SARIN, KAVITA YANG · 2018 to 2022
$868k
NCI NIH HHS K23 CA211793NCI NIH HHS P30 CA124435NIAMS NIH HHS R01 AR046786NIAMS NIH HHS R01 AR054780NIAMS NIH HHS R37 AR054780
6 · The paper itself

Abstract

Basosquamous carcinoma (BSC) is an aggressive skin neoplasm with the features of both basal cell carcinoma (BCC) and squamous cell carcinoma (SCC). While genetic drivers of BCC and SCC development have been extensively characterized, BSC has not been well studied, and it remains unclear whether these tumors originally derive from BCC or SCC. In addition, it is unknown which molecular pathways mediate the reprogramming of tumor keratinocytes toward basaloid or squamatized phenotypes. We sought to characterize the genomic alterations underlying sporadic BSC to elucidate the derivation of these mixed tumors. We identifed frequent Hedgehog (Hh) pathway mutations in BSCs, implicating Hh deregulation as the primary driving event in BSC. Principal component analysis of BCC and SCC driver genes further demonstrate the genetic similarity between BCC and BSC. In addition, 45% of the BSCs harbor recurrent mutations in the SWI/SNF complex gene, ARID1A, and evolutionary analysis revealed that ARID1A mutations occur after PTCH1 but before SCC driver mutations, indicating that ARID1A mutations may bestow plasticity enabling squamatization. Finally, we demonstrate mitogen-activated protein kinase pathway activation and the loss of Hh signaling associated with the squamatization of BSCs. Overall, these results support the genetic derivation of BSCs from BCCs and highlight potential factors involved in modulating tumor reprogramming between basaloid and squamatized phenotypes.

Indexed as

Adaptation, PhysiologicalAdultAgedAged, 80 and overCarcinoma, BasosquamousDNA-Binding ProteinsDNA Mutational AnalysisFemaleHedgehog ProteinsHumansMaleMiddle AgedMutationSkin NeoplasmsTranscription FactorsWhole Genome SequencingARID1A protein, humanDNA-Binding ProteinsHedgehog ProteinsTranscription Factors

Identifiers

PMID31207229
PMCPMC6839544
OpenAlexW2951426938

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.