Evidence map›Paper›PMID 31207142›Full record

ArticleMolecular genetics & genomic medicine2019

Investigation of new candidate genes in retinoblastoma using the TruSight One "clinical exome" gene panel.

Demet Akdeniz, Seref Bugra Tuncer, Rejin Kebudi, Betul Celik, Gozde Kuru, Seda Kilic, Ozge Sukruoglu Erdogan, Mukaddes Avsar, Sema Buyukkapu Bay, Samuray Tuncer and 1 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  4. NovelDiagnostics (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Demet AkdenizDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0002-2271-8481
Seref Bugra TuncerDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0001-8023-3223
Rejin KebudiDivision of Pediatric Hematology-Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0003-4344-8174
Betul CelikDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0001-7923-275X
Gozde KuruDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0001-5974-4731
Seda KilicDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0003-4417-4005
Ozge Sukruoglu ErdoganDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0002-0893-1251
Mukaddes AvsarDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0002-5489-9088
Sema Buyukkapu BayDivision of Pediatric Hematology-Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0002-2539-4662
Samuray TuncerIstanbul Medical Faculty, Department of Ophthalmology, Istanbul University, Istanbul, Turkey.ORCID 0000-0001-7491-8613
Hulya YaziciDivision of Cancer Genetics, Department of Basic Oncology, Oncology Institute, Istanbul University, Istanbul, Turkey.ORCID 0000-0002-8919-0482
Istanbul University · TRIstanbul University-Cerrahpaşa · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRetinoblastoma (Rb) is the most prevalent intraocular pediatric malignancy of the retina. Significant genetic factors are known to have a role in the development of Rb.

methodsHere, we report the mutation status of 4813 clinically significant genes in six patients with noncarrier of RB1 gene mutation and having normal RB1 promoter methylation from three families having higher risk for developing Rb in the study.

resultsA total of 27 variants were detected in the study. Heterozygous missense variants c.1162G > A (p.Gly388Arg) in the FGFR4 gene; c.559C > T (p.Pro187Ser) in the NQO1 gene were identified. The family based evaluation of the variants showed that the variant, c.714T > G (p.Tyr238Ter), in the CLEC7A gene in first family; the variant, c.55C > T (p.Arg19Ter), in the APOC3 gene and the variant, c.1171C > T (p.Gln391Ter), in the MUTYH gene in second family; and the variant, c.211G > A (p.Gly71Arg), in the UGT1A1 gene in the third family, were found statistically significant (p < 0.05).

conclusionThis study might be an important report on emphazing the mutational status of other genes in patients without RB1 gene mutations and having high risk for developing Rb. The study also indicates the interaction between the retinoic acid pathway and Rb oncogenesis for the first time.

Indexed as

AdultChildChild, PreschoolDNA GlycosylasesExomeFemaleGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseGlucuronosyltransferaseHeterozygoteHigh-Throughput Nucleotide SequencingHumansMaleMutation, MissenseNAD(P)H Dehydrogenase (Quinone)PedigreeDNA GlycosylasesFGFR4 protein, humanGlucuronosyltransferasemutY adenine glycosylaseNAD(P)H Dehydrogenase (Quinone)NQO1 protein, humanRB1 protein, humanReceptor, Fibroblast Growth Factor, Type 4Retinoblastoma Binding ProteinsTretinoinUbiquitin-Protein LigasesUGT1A1 Enzymemutationnext-generation sequencingRB1 generetinoblastomaretinoic acid pathway

Identifiers

PMID31207142
PMCPMC6687622
OpenAlexW2951023412

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.