Evidence map›Paper›PMID 31206626›Full record

ArticleCancer2019

Pathogenic and likely pathogenic variants in PALB2, CHEK2, and other known breast cancer susceptibility genes among 1054 BRCA-negative Hispanics with breast cancer.

Jeffrey N Weitzel, Susan L Neuhausen, Aaron Adamson, Shu Tao, Charité Ricker, Asaf Maoz, Margalit Rosenblatt, Bita Nehoray, Sharon Sand, Linda Steele and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 60 citations in OpenAlex.

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  13. Cancers · 2023
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  18. Review
  19. Cancer Epidemiology in Hispanic Populations: What Have We Learned and Where Do We Need to Make Progress?Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Jeffrey N WeitzelDivision of Clinical Cancer Genomics, City of Hope, Duarte, California.ORCID 0000-0001-6714-092X
Susan L NeuhausenDivision of Biomarkers of Early Detection and Prevention, City of Hope, Duarte, California.
Aaron AdamsonDivision of Biomarkers of Early Detection and Prevention, City of Hope, Duarte, California.
Shu TaoIntegrative Genomics Core, City of Hope, Duarte, California.
Charité RickerClinical Cancer Genomics Community Research Network, Los Angeles, California.
Asaf MaozUniversity of Southern California Norris Comprehensive Cancer Center, Los Angeles, California.ORCID 0000-0002-7502-3923
Margalit RosenblattUniversity of California at San Francisco Helen Diller Family Comprehensive Cancer Center, San Francisco, California.
Bita NehorayDivision of Clinical Cancer Genomics, City of Hope, Duarte, California.
Sharon SandDivision of Clinical Cancer Genomics, City of Hope, Duarte, California.
Linda SteeleDivision of Biomarkers of Early Detection and Prevention, City of Hope, Duarte, California.
Gary UnzeitigClinical Cancer Genomics Community Research Network, Los Angeles, California.
Nancy FeldmanClinical Cancer Genomics Community Research Network, Los Angeles, California.
Amie M BlancoUniversity of California at San Francisco Helen Diller Family Comprehensive Cancer Center, San Francisco, California.
Donglei HuDivision of General Internal Medicine, Department of Medicine, University of California at San Francisco, San Francisco, California.
Scott HuntsmanDivision of General Internal Medicine, Department of Medicine, University of California at San Francisco, San Francisco, California.
Danielle CastilloDivision of Clinical Cancer Genomics, City of Hope, Duarte, California.
Christopher HaimanCenter for Genetic Epidemiology, Department of Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, California.
Thomas SlavinDivision of Clinical Cancer Genomics, City of Hope, Duarte, California.
Elad ZivUniversity of California at San Francisco Helen Diller Family Comprehensive Cancer Center, San Francisco, California.
Pancreatic Cancer Action Network · USCity Of Hope National Medical Center · USSan Francisco General Hospital · USUniversity of Southern California · USUCSF Helen Diller Family Comprehensive Cancer Center · USCity of Hope · US

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Fumito Ito · 1985 to 2026
$181.4M
Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Understanding Population Differences in Cancer: The MEC StudyU01CA164973 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI HAIMAN, CHRISTOPHER ALAN, LE MARCHAND, LOIC · 2015 to 2025
$37.4M
CALIFORNIA TEACHERS STUDYR01CA077398 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BERNSTEIN, LESLIE · 1998 to 2014
$29.7M
GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSR01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2001 to 2005
$23.2M
Multiethnic Cohort Study of Diet and CancerR37CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 2003 to 2012
$23.2M
Understanding Ethnic Differences in Cancer: The Multiethnic Cohort StudyUM1CA164973 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI HENDERSON, BRIAN E, LE MARCHAND, LOIC · 2012 to 2014
$11.3M
MULTIETHNIC/MINORITY COHORT STUDY OF DIET AND CANCERR01CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 1993 to 2002
$4.5M
Germline and Tumor Genomic Analyses of Breast Cancer in LatinasR01CA184585 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NEUHAUSEN, SUSAN L., ZIV, ELAD · 2014 to 2018
$4.2M
Genetics of mammographic density and breast cancer risk in LatinasK24CA169004 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ZIV, ELAD · 2012 to 2021
$1.8M
Discovery and Characterization of Mutations in Breast and Ovarian CancersR50CA211280 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ADAMSON, AARON · 2016 to 2020
$1.1M
Clinical Cancer Genetics Community Network: A Sustainable Research PartnershipRC4CA153828 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI WEITZEL, JEFFREY N · 2010 to 2010
$1.0M
NCI NIH HHS K08 CA234394NCI NIH HHS K24 CA169004NCI NIH HHS P30 CA014089NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA054281NCI NIH HHS R01 CA063464NCI NIH HHS R01 CA077398NCI NIH HHS R01 CA184585NCI NIH HHS R37 CA054281NCI NIH HHS R50 CA211280NCI NIH HHS U01 CA063464NCI NIH HHS U01 CA164973NCI NIH HHS UM1 CA164973
6 · The paper itself

Abstract

backgroundBreast cancer (BC) is the most common cancer and related cause of mortality among Hispanics, yet susceptibility has been understudied. BRCA1 and BRCA2 (BRCA) mutations explain less than one-half of hereditary BC, and the proportion associated with other BC susceptibility genes is unknown.

methodsGermline DNA from 1054 BRCA-mutation-negative Hispanic women with hereditary BC (BC diagnosed at age <51 years, bilateral BC, breast and ovarian cancer, or BC diagnosed at ages 51-70 years with ≥2 first-degree or second-degree relatives who had BC diagnosed at age <70 years), 312 local controls, and 887 multiethnic cohort controls was sequenced and analyzed for 12 known and suspected, high-penetrance and moderate-penetrance cancer susceptibility genes (ataxia telangiectasia mutated [ATM], breast cancer 1 interacting protein C-terminal helicase 1 [BRIP1], cadherin 1 [CDH1], checkpoint kinase 2 [CHEK2], nibrin [NBN], neurofibromatosis type 1 [NF1], partner and localizer of BRCA2 [PALB2], phosphatase and tensin homolog [PTEN], RAD51 paralog 3 [RAD51C], RAD51D, serine/threonine kinase 11 [STK11], and TP53).

resultsForty-nine (4.6%) pathogenic or likely pathogenic variants (PVs) in 47 of 1054 participants (4.5%), including 21 truncating frameshift, 20 missense, 5 nonsense, and 4 splice variants, were identified in CHEK2 (n = 20), PALB2 (n = 18), ATM (n = 5), TP53 (n = 3), BRIP1 (n = 2), and CDH1 and NF1 (both n = 1) and none were identified in NBN, PTEN, STK11, RAD51C, or RAD51D. Nine participants carried the PALB2 c.2167_2168del PV (0.85%), and 14 carried the CHEK2 c.707T>C PV (1.32%).

conclusionsOf 1054 BRCA-negative, high-risk Hispanic women, 4.5% carried a PV in a cancer susceptibility gene, increasing understanding of hereditary BC in this population. Recurrent PVs in PALB2 and CHEK2 represented 47% (23 of 49) of the total, suggesting a founder effect. Accurate classification of variants was enabled by carefully controlling for ancestry and the increased identification of at-risk Hispanics for screening and prevention.

Indexed as

AgedAMP-Activated Protein Kinase KinasesAtaxia Telangiectasia Mutated ProteinsBRCA2 ProteinBreast NeoplasmsCase-Control StudiesCheckpoint Kinase 2DNA-Binding ProteinsFanconi Anemia Complementation Group N ProteinFemaleGene FrequencyGenetic Predisposition to DiseaseHispanic or LatinoHumansMiddle AgedProtein Serine-Threonine KinasesAMP-Activated Protein Kinase KinasesAtaxia Telangiectasia Mutated ProteinsATM protein, humanBRCA2 ProteinBRCA2 protein, humanCheckpoint Kinase 2CHEK2 protein, humanDNA-Binding ProteinsFanconi Anemia Complementation Group N ProteinPALB2 protein, humanProtein Serine-Threonine KinasesPTEN PhosphohydrolasePTEN protein, humanRAD51C protein, humanRAD51D protein, humanSTK11 protein, humanbreast cancercheckpoint kinase 2 (CHEK2)disparitiesHispanicsovarian cancerpartner and localizer of BRCA2 (PALB2)whole-exome sequencing

Identifiers

PMID31206626
PMCPMC7376605
OpenAlexW2950566230

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.