Evidence map›Paper›PMID 31206249›Full record

ArticleMolecular genetics & genomic medicine2019

Characterization of large deletions of the MECP2 gene in Rett syndrome patients by gene dosage analysis.

Silvia Vidal, Ainhoa Pascual-Alonso, Marc Rabaza-Gairí, Edgar Gerotina, Nuria Brandi, Paola Pacheco, Clara Xiol, Mercè Pineda, Rett Working Group, Judith Armstrong

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. International journal of molecular sciences · 2021
    Review
  5. Article
  6. Ten novel insertion/deletion variants inHuman genome variation · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Silvia VidalSant Joan de Déu Research Foundation, Barcelona, Spain.
Ainhoa Pascual-AlonsoSant Joan de Déu Research Foundation, Barcelona, Spain.
Marc Rabaza-GairíSant Joan de Déu Research Foundation, Barcelona, Spain.
Edgar GerotinaSant Joan de Déu Research Foundation, Barcelona, Spain.
Nuria BrandiFacultat de Medicina, Universitat de Barcelona, Barcelona, Spain.
Paola PachecoMolecular and Genetics Medicine Section, Hospital Sant Joan de Déu, Barcelona, Spain.
Clara XiolSant Joan de Déu Research Foundation, Barcelona, Spain.
Mercè PinedaSant Joan de Déu Research Foundation, Barcelona, Spain.
Rett Working Group
Judith ArmstrongSant Joan de Déu Research Institute (IRSJD), Hospital Sant Joan de Déu, Esplugues de Lobregat (Barcelona), Spain.ORCID 0000-0003-0588-9307
Sant Joan de Déu Research Foundation · ESHospital Sant Joan de Déu Barcelona · ESUniversitat de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRett syndrome (RTT) is a developmental disorder with an early onset and X-linked dominant inheritance pattern. It is first recognized in infancy and is seen almost always in girls, but it may be seen in boys on rare occasions. Typical RTT is caused by de novo mutations of the gene MECP2 (OMIM*300005), and atypical forms of RTT can be caused by mutations of the CDKL5 (OMIM*300203) and FOXG1 (OMIM*164874) genes.

methodsApproximately 5% of the mutations detected in MECP2 are large rearrangements that range from exons to the entire gene. Here, we have characterized the deletions detected by multiplex ligation-dependent probe amplification (MLPA) in the gene MECP2 of 21 RTT patients. Breakpoints were delineated by DNA-qPCR until the amplification of the deleted allele by long-PCR was possible.

resultsThis methodology enabled us to characterize deletions ranging from 1,235 bp to 85 kb, confirming the partial or total deletion of the MECP2 gene in all these patients. Additionally, our cases support the evidence claiming that most of these breakpoints occur in some restricted regions of the MECP2 gene.

conclusionThese molecular data together with the clinical information enable us to propose a genotype-phenotype correlation, which is essential for providing genetic counseling.

Indexed as

Gene DosageSequence DeletionAdolescentAllelesChildChild, PreschoolDNA Mutational AnalysisFemaleForkhead Transcription FactorsGenetic Association StudiesGenotypeHumansMethyl-CpG-Binding Protein 2Nerve Tissue ProteinsPhenotypeProtein Serine-Threonine KinasesCDKL5 protein, humanForkhead Transcription FactorsFOXG1 protein, humanMECP2 protein, humanMethyl-CpG-Binding Protein 2Nerve Tissue ProteinsProtein Serine-Threonine Kinaseslarge deletionsMECP2Phenotype-genotype correlationsRett syndrome

Identifiers

PMID31206249
PMCPMC6687651
OpenAlexW2952695234

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.