Evidence map›Paper›PMID 31204250›Full record

ArticleStructure (London, England : 1993)2019

A Conserved Allosteric Pathway in Tyrosine Kinase Regulation.

William M Marsiglia, Joseph Katigbak, Sijin Zheng, Moosa Mohammadi, Yingkai Zhang, Nathaniel J Traaseth

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. α, δ‑ACS pharmacology & translational science · 2025
    Article
  3. Review
  4. Landscape of Clinical Resistance Mechanisms to FGFR Inhibitors in FGFR2-Altered Cholangiocarcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  5. Article
  6. Gatekeeper mutations activate FGF receptor tyrosine kinases by destabilizing the autoinhibited state.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. Fibroblast growth factor receptor fusions in cancer: opportunities and challenges.Journal of experimental & clinical cancer research : CR · 2021
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

William M MarsigliaDepartment of Chemistry, New York University, New York, NY 10003, USA.
Joseph KatigbakDepartment of Chemistry, New York University, New York, NY 10003, USA.
Sijin ZhengDepartment of Chemistry, New York University, New York, NY 10003, USA.
Moosa MohammadiDepartment of Biochemistry & Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Yingkai ZhangDepartment of Chemistry, New York University, New York, NY 10003, USA; NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China.
Nathaniel J TraasethDepartment of Chemistry, New York University, New York, NY 10003, USA. Electronic address: traaseth@nyu.edu.

Funding

MECHANISMS OF FGF RECEPTOR REGULATION AND SIGNALINGR01DE013686 · NIDCR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MOHAMMADI, MOOSA · 2000 to 2020
$12.3M
Computational modulator design and machine learning to target protein-protein interactionsR35GM127040 · NIGMS · NEW YORK UNIVERSITY · PI Yingkai Zhang · 2018 to 2026
$4.6M
Mechanisms of initiation of T-cell signaling by the TCR-CD3 complexR01GM124489 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KROGSGAARD, MICHELLE · 2018 to 2021
$2.1M
FGF Receptor Structure, Dynamics and FunctionR01GM117118 · NIGMS · NEW YORK UNIVERSITY · PI TRAASETH, NATHANIEL J. · 2017 to 2020
$1.3M
Acquisition of a Cryoprobe for a 600 MHz NMR SpectrometerS10OD016343 · OD · NEW YORK UNIVERSITY · PI KROGSGAARD, MICHELLE, TRAASETH, NATHANIEL J. · 2014 to 2014
$360k
Mechanisms of resistance and activation conferred by kinases displaying hinge and gate-keeper mutationsF99CA212474 · NCI · NEW YORK UNIVERSITY · PI MARSIGLIA, WILLIAM M · 2016 to 2017
$89k
NCI NIH HHS F99 CA212474NIDCR NIH HHS R01 DE013686NIGMS NIH HHS R01 GM117118NIGMS NIH HHS R01 GM124489NIGMS NIH HHS R35 GM127040NIH HHS S10 OD016343ODCDC CDC HHS S10 OD016343
6 · The paper itself

Abstract

An autoinhibitory network of hydrogen bonds located at the kinase hinge (referred to as the "molecular brake") regulates the activity of several receptor tyrosine kinases. The mechanism whereby mutational disengagement of the brake allosterically activates the kinase in human disease is incompletely understood. We used a combination of NMR, bioinformatics, and molecular dynamics simulation to show that mutational disruption of the molecular brake triggers localized conformational perturbations that propagate to the active site. This entails changes in interactions of an isoleucine, one of three hydrophobic residues that lock the phenylalanine of the DFG motif in an inactive conformation. Structural analysis of tyrosine kinases provides evidence that this allosteric control mechanism is shared across the tyrosine kinase family. We also show that highly activating mutations at the brake diminish the enzyme's thermostability, thereby explaining why these mutations cause milder skeletal syndromes compared with less-activating mutations in the activation loop.

Indexed as

MutationAllosteric RegulationCatalytic DomainHumansHydrophobic and Hydrophilic InteractionsIsoleucineMagnetic Resonance SpectroscopyMolecular Dynamics SimulationProtein ConformationProtein-Tyrosine KinasesIsoleucineProtein-Tyrosine KinasesallosteryFGF receptorNMR spectroscopypathogenic mutationstyrosine kinases

Identifiers

PMID31204250
PMCPMC6687525

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.